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[178888_at]

Description F25H9.3 /REP_DB=WormBase Gene ID /WP=CE09660 /TR=P91986 /GB=CAB02989.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 11
(-2.6)
A 		27
(-1.1)
A 		6.5
(-3)
A 		72.8
(3)
P 		66
B 60
(3)
A 		15.8
(-3)
A 		26.4
(-1.6)
A 		55.7
(2.4)
A 		44
C 26.1
(-3)
A 		69.1
(2.1)
P 		26
(-3)
A 		76.5
(3)
M 		51
avr 32.4
(-1.4) 		37.3
(-0.8) 		19.6
(-3) 		68.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 30.3
(2.7)
A 		26
(1.6)
A 		7.5
(-2.9)
A 		7.2
(-3)
A 		31.5
(3)
A 		24
(1.1)
A 		24
B 30.4
(0.6)
A 		33.1
(1)
A 		44.4
(3)
A 		10
(-3)
A 		36.2
(1.6)
A 		17.8
(-1.6)
A 		34
C 43.9
(3)
A 		10.1
(-1.8)
A 		18.7
(-0.6)
A 		8.1
(-2.1)
A 		1.7
(-3)
A 		5.7
(-2.4)
A 		42
avr 34.9
(3) 		23.1
(0.3) 		23.5
(0.4) 		8.4
(-3) 		23.1
(0.3) 		15.8
(-1.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4
(-1.5)
A 		5.9
(-0.2)
A 		1.7
(-3)
A 		10.7
(3)
P 		9
B 19.1
(3)
A 		3.9
(-3)
A 		6.1
(-2.1)
A 		11.9
(0.2)
A 		15
C 8.7
(-3)
A 		19.9
(3)
P 		9.1
(-2.8)
A 		12.9
(-0.8)
M 		11
avr 10.6
(1.8) 		9.9
(1.2) 		5.6
(-3) 		11.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.6
(0)
A 		9.3
(2.8)
A 		1.6
(-3)
A 		1.8
(-2.8)
A 		9.5
(3)
A 		5.8
(0.2)
A 		8
B 10.6
(1)
A 		11
(1.2)
A 		10.8
(1.1)
A 		2.6
(-3)
A 		14.7
(3)
A 		6.6
(-1)
A 		12
C 16.3
(3)
A 		3.1
(-2)
A 		4.8
(-1.4)
A 		1.6
(-2.6)
A 		0.6
(-3)
A 		1.9
(-2.5)
A 		16
avr 10.8
(3) 		7.8
(1) 		5.7
(-0.5) 		2
(-3) 		8.3
(1.3) 		4.8
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14240
Sequence Type Exemplar sequence
Representative Public ID F25H9.3 NCBI
Target Description F25H9.3 /REP_DB=WormBase Gene ID /WP=CE09660 /TR=P91986 /GB=CAB02989.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073936(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073936 NCBI Caenorhabditis elegans F25H9.3 (F25H9.3) mRNA, complete cds. 11/11 None
SNAP00000006462 ENSEMBL cdna:SNAP chromosome:CEL140:V:13458894:13460097:1 11/11 None
GENEFINDER00000006469 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13456723:13460097:1 11/11 None
F25H9.3 ENSEMBL cdna:known chromosome:CEL140:V:13458339:13460097:1 gene:F25H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13458338-13460097(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F25H9.3
Entrez Gene 184942 Entrez gene
SwissProt P91986 EMBL-EBI
WormBase CE09660 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4675 transmembrane receptor protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5024 transforming growth factor beta receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02989 Hypothetical protein F25H9.3 [Caenorhabditis elegans] ref|NP_506337.1| F25H9.3 [Caenorhabditis elegans] 0.0
blast CAB02990 Hypothetical protein F25H9.1 [Caenorhabditis elegans] ref|NP_506336.1| F25H9.1 [Caenorhabditis elegans] 1.0E-177
blast CAB02989 Hypothetical protein F25H9.3 [Caenorhabditis elegans] ref|NP_506337.1| F25H9.3 [Caenorhabditis elegans] 1.0E-168
blast CAB02989 Hypothetical protein F25H9.3 [Caenorhabditis elegans] ref|NP_506337.1| F25H9.3 [Caenorhabditis elegans] 1.0E-124
blast CAH04726 Hypothetical protein C34B4.4 [Caenorhabditis elegans] ref|NP_001023697.1| C34B4.4 [Caenorhabditis elegans] 1.0E-114
blast CAB02990 Hypothetical protein F25H9.1 [Caenorhabditis elegans] ref|NP_506336.1| F25H9.1 [Caenorhabditis elegans] 2.0E-95
blast CAE62587 Hypothetical protein CBG06701 [Caenorhabditis briggsae] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.8E-8
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.8E-8
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.6E-7
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 1.8E-8
Sequence
Target Sequence 
>C. ELEGANS:178888_AT
caaacggacgaatcagggccatttaatttacaattcacgaaatatatggaaactcgacta
gccaccaatttttacacagaagcgtgctacaatgtctcattgcattcatttcattattca
acctattgcaaatgcacaacgaaaaactgtaatgatccagaagccccaattccctatcca
atatcatcgcctactgtgtcatgttataccagtggttatgacgcaaaagttgacaatgcg
aagtatgagactgatggtgatttttatgagaacatatacagagatttaatgcaaaatgag
agttattacgacgaaggaattcaatgtcgtgggcactactgttttatcgcggtggacaag
attcatgaaaaacctcttcacttcaaaggatgtatatcggcaaatgagcagggagataat
aaaatacagcttggatactcgtttataaacgaaattccatacttcatttgtaatactgat
ttttgcaattacgatattgcaacagcgaccgatgaagcacgaaacgcaacagcagttcaa
gacaattcttctaatttgagcaaaaatattattatctttgtcttcattatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACGGACGAATCAGGGCCATTTA 232 191 448 Antisense
TCGACTAGCCACCAATTTTTACACA 695 601 501 Antisense
GAAGCGTGCTACAATGTCTCATTGC 191 343 526 Antisense
GCATTCATTTCATTATTCAACCTAT 61 309 549 Antisense
GTAATGATCCAGAAGCCCCAATTCC 478 461 596 Antisense
CTATCCAATATCATCGCCTACTGTG 324 225 621 Antisense
TCGCCTACTGTGTCATGTTATACCA 471 597 634 Antisense
GGAATTCAATGTCGTGGGCACTACT 269 533 763 Antisense
GGCACTACTGTTTTATCGCGGTGGA 670 535 779 Antisense
GCAACAGCGACCGATGAAGCACGAA 411 319 946 Antisense
TATTATCTTTGTCTTCATTATTTCT 499 663 1017 Antisense
Sequence Source Affymetrix Proprietary Database