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[178887_at]

Description B0019.2 /REP_DB=WormBase Gene ID /WP=CE18477 /TR=Q9XXU6 /GB=CAA15508.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 91      6grp_total > 69      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 212.8
(3)
P 		124.6
(-1.6)
P 		97.9
(-3)
P 		199.8
(2.3)
P 		115
B 255
(3)
P 		146.7
(-0.8)
P 		83.5
(-3)
P 		250.7
(2.8)
P 		172
C 195.3
(3)
P 		127.2
(-2.2)
P 		116.5
(-3)
P 		179.1
(1.8)
P 		79
avr 221
(3) 		132.8
(-1.3) 		99.3
(-3) 		209.9
(2.5) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 265.8
(0.9)
P 		179
(-1.8)
P 		140.9
(-3)
P 		196
(-1.3)
P 		207.5
(-0.9)
P 		331.9
(3)
P 		191
B 156.9
(-2.8)
P 		154
(-3)
P 		173.1
(-1.5)
P 		184.3
(-0.6)
P 		194.3
(0.1)
P 		231.3
(3)
P 		77
C 198.1
(-0.9)
P 		155
(-3)
P 		192.3
(-1.2)
P 		216.6
(-0)
P 		192.2
(-1.2)
P 		280
(3)
P 		125
avr 206.9
(-0.8) 		162.7
(-3) 		168.8
(-2.7) 		199
(-1.2) 		198
(-1.2) 		281.1
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 77.5
(3)
P 		27
(-2.8)
P 		25.6
(-3)
P 		29.3
(-2.6)
P 		52
B 81.3
(3)
P 		36.2
(-1.4)
P 		19.4
(-3)
P 		53.4
(0.3)
P 		62
C 64.6
(3)
P 		36.6
(-1.9)
P 		40.6
(-1.2)
P 		30.2
(-3)
P 		34
avr 74.5
(3) 		33.3
(-2.4) 		28.5
(-3) 		37.6
(-1.8) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 49
(-0.8)
P 		63.7
(1)
P 		30.7
(-3)
P 		49.7
(-0.7)
P 		62.6
(0.8)
P 		80.8
(3)
P 		50
B 54.6
(-1.3)
P 		51.2
(-1.8)
P 		42
(-3)
P 		48.8
(-2.1)
P 		79
(2)
P 		86.3
(3)
P 		44
C 73.4
(0.6)
P 		47.3
(-2.6)
P 		48.9
(-2.4)
P 		43.6
(-3)
P 		62.2
(-0.8)
P 		93.7
(3)
P 		50
avr 59
(-0.6) 		54.1
(-1.2) 		40.5
(-3) 		47.4
(-2.1) 		67.9
(0.5) 		86.9
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1361
Sequence Type Exemplar sequence
Representative Public ID B0019.2 NCBI
Target Description B0019.2 /REP_DB=WormBase Gene ID /WP=CE18477 /TR=Q9XXU6 /GB=CAA15508.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060836 NCBI Caenorhabditis elegans B0019.2 (B0019.2) mRNA, complete cds. 11/11 None
GENEFINDER00000019307 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12781782:12788240:1 11/11 None
B0019.2 ENSEMBL cdna:known chromosome:CEL140:I:12781780:12790366:1 gene:B0019.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12782214-12783358(+) 96.72 100.0
Public Domain and Genome References
Gene Title
Ensembl B0019.2
Entrez Gene 173147 Entrez gene
SwissProt Q9XXU6 EMBL-EBI
WormBase CE37075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19090 Hypothetical protein B0019.2 [Caenorhabditis elegans] emb|CAA15508.2| Hypothetical protein B0019.2 [Caenorhabditis elegans] ref|NP_493237.2| B0019.2 [Caenorhabditis elegans] 0.0
blast T18636 hypothetical protein B0019.3 - Caenorhabditis elegans 1.0E-156
blast T18636 hypothetical protein B0019.3 - Caenorhabditis elegans 3.0E-83
blast CAA20934 Hypothetical protein F28H6.4 [Caenorhabditis elegans] ref|NP_510354.1| F28H6.4 [Caenorhabditis elegans] 6.0E-79
blast CAA20934 Hypothetical protein F28H6.4 [Caenorhabditis elegans] ref|NP_510354.1| F28H6.4 [Caenorhabditis elegans] 1.0E-77
Protein Domains
Database ID Description E-Value
scop a.4.1.Myb All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Myb 5.5
Sequence
Target Sequence 
>C. ELEGANS:178887_AT
gatacggtgccgacagtttattggtgttcagaaggatattgaatgttatcggaatcactt
caaattcgctctaatcaaacttcacctaattccatacgtcactctacaagaaaaagctga
tctctactttgcactggacctacatgtcgacaaatccatccgccaggagctcatcgacac
gtatcaagtggaaatcaataaatacggttatctgacgggatgctcgaatttcgaacactg
gattcccgttttgctccagaattctagtgctccgaaatctcgtctttctacagcacctca
tcgacgaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACGGTGCCGACAGTTTATTGGT 458 423 132 Antisense
TTCGCTCTAATCAAACTTCACCTAA 672 695 196 Antisense
CCTAATTCCATACGTCACTCTACAA 8 269 216 Antisense
CTACTTTGCACTGGACCTACATGTC 527 225 255 Antisense
CCTACATGTCGACAAATCCATCCGC 640 261 270 Antisense
GGAGCTCATCGACACGTATCAAGTG 503 521 297 Antisense
TACGGTTATCTGACGGGATGCTCGA 602 647 334 Antisense
CGAACACTGGATTCCCGTTTTGCTC 153 253 363 Antisense
TCCCGTTTTGCTCCAGAATTCTAGT 569 597 375 Antisense
AATTCTAGTGCTCCGAAATCTCGTC 687 175 391 Antisense
TCTACAGCACCTCATCGACGAAATT 151 613 418 Antisense
Sequence Source Affymetrix Proprietary Database