[Home] | [Total List]

[178886_at]

Description F32D8.3 /REP_DB=WormBase Gene ID /WP=CE05782 /TR=Q19964 /GB=CAA98455.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 83      4grp_total > 49      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 91.7
(-1.9)
A 		343
(1.9)
P 		419.5
(3)
P 		19.2
(-3)
A 		400
B 63.1
(-2.7)
A 		456.3
(3)
P 		388.4
(2)
P 		45.6
(-3)
A 		411
C 101.8
(-2.5)
A 		412
(3)
P 		394.8
(2.7)
P 		71.9
(-3)
A 		340
avr 85.5
(-2.3) 		403.8
(3) 		400.9
(3) 		45.6
(-3) 		358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 937
1 2 3 4 5 6 range
A 162.2
(-2.8)
P 		202.9
(-2.6)
P 		223.4
(-2.4)
P 		529
(-0.4)
P 		1024.6
(3)
P 		139.5
(-3)
P 		885
B 142.3
(-3)
A 		195.1
(-2.6)
P 		218.6
(-2.5)
P 		417.5
(-1.1)
P 		1025.4
(3)
P 		146.2
(-3)
P 		883
C 88.4
(-3)
A 		202
(-2.2)
P 		258.2
(-1.9)
P 		592.9
(0.4)
P 		986.8
(3)
P 		108
(-2.9)
P 		898
avr 131
(-3) 		200
(-2.5) 		233.4
(-2.3) 		513.1
(-0.4) 		1012.3
(3) 		131.2
(-3) 		881
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 33.4
(-1.3)
A 		74.5
(1)
P 		109.7
(3)
P 		2.8
(-3)
A 		107
B 20.1
(-2.4)
A 		112.7
(3)
P 		90
(1.7)
P 		9.7
(-3)
A 		103
C 33.7
(-2)
A 		118.5
(2.1)
P 		137.6
(3)
P 		12.1
(-3)
A 		126
avr 29.1
(-1.8) 		101.9
(2.4) 		112.4
(3) 		8.2
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 29.9
(-3)
P 		72.1
(-2.1)
P 		48.6
(-2.6)
P 		134.2
(-0.8)
P 		309.2
(3)
P 		34
(-2.9)
P 		279
B 49.5
(-3)
A 		64.9
(-2.7)
P 		53.1
(-2.9)
P 		110.6
(-2)
P 		416.6
(3)
P 		54.5
(-2.9)
P 		367
C 32.8
(-3)
A 		61.6
(-2.4)
P 		65.7
(-2.3)
P 		119.2
(-1.2)
P 		319.3
(3)
P 		36.2
(-2.9)
P 		287
avr 37.4
(-3) 		66.2
(-2.4) 		55.8
(-2.6) 		121.3
(-1.4) 		348.4
(3) 		41.6
(-2.9) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14432
Sequence Type Exemplar sequence
Representative Public ID F32D8.3 NCBI
Target Description F32D8.3 /REP_DB=WormBase Gene ID /WP=CE05782 /TR=Q19964 /GB=CAA98455.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073371 NCBI Caenorhabditis elegans F32D8.3 (F32D8.3) mRNA, complete cds. 11/11 None
SNAP00000041025 ENSEMBL cdna:SNAP chromosome:CEL140:V:10889707:10890426:1 11/11 None
GENEFINDER00000041051 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10889557:10890426:1 11/11 None
F32D8.3 ENSEMBL cdna:known chromosome:CEL140:V:10889557:10890426:1 gene:F32D8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10889556-10890426(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32D8.3
Entrez Gene 185205 Entrez gene
SwissProt Q19964 EMBL-EBI
WormBase CE05782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98455 Hypothetical protein F32D8.3 [Caenorhabditis elegans] ref|NP_505772.1| F32D8.3 [Caenorhabditis elegans] 1.0E-115
blast CAA98455 Hypothetical protein F32D8.3 [Caenorhabditis elegans] ref|NP_505772.1| F32D8.3 [Caenorhabditis elegans] 1.0E-96
blast CAE64908 Hypothetical protein CBG09727 [Caenorhabditis briggsae] 2.0E-96
blast CAE64908 Hypothetical protein CBG09727 [Caenorhabditis briggsae] 5.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 6.3E-19
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 6.3E-19
Sequence
Target Sequence 
>C. ELEGANS:178886_AT
gaaaactgccctatgttccaatcattttctcattgtgcctgtgaatcaacctgcaacaat
ccagacccgtattgctctaaatgtgagcctggatgcacttgtcgaaatggatttgttcgg
aattctctcaaattgtgtgttctaccggaagaatgcccacggaccaaacttcgacgtttt
gaactacaaccacctagacgactctatgaagccgttccagttgttatcacaactaccaca
gaagaacctactagagcaacaactgaagagccgacaactgaacttataacagctactgaa
attgctgatgaactcgtaacagtaccactgatagttcttcgtaatggaccaacacctcca
tcggctcctccaatgctacaagaactctcgtctgacatgatcggagctccatcagcaact
cctcctccagacttttcctatgggccaccaggaatgaatgcagcaaaagttgcattgtat
gagaattttctcaaacaaaaacgaattatgagagctctccgtcatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTGCCCTATGTTCCAATCAT 147 355 193 Antisense
TGTGCCTGTGAATCAACCTGCAACA 623 555 226 Antisense
GCAACAATCCAGACCCGTATTGCTC 324 319 245 Antisense
ATGTGAGCCTGGATGCACTTGTCGA 8 51 273 Antisense
GAAGAATGCCCACGGACCAAACTTC 505 339 340 Antisense
GACGTTTTGAACTACAACCACCTAG 548 369 365 Antisense
GACTCTATGAAGCCGTTCCAGTTGT 613 371 392 Antisense
GCTCCTCCAATGCTACAAGAACTCT 261 299 556 Antisense
GAACTCTCGTCTGACATGATCGGAG 407 349 574 Antisense
TGATCGGAGCTCCATCAGCAACTCC 318 565 590 Antisense
AATTATGAGAGCTCTCCGTCATCGC 438 175 696 Antisense
Sequence Source Affymetrix Proprietary Database