[Home] | [Total List]

[178884_at]

Description K08C7.4 /REP_DB=WormBase Gene ID /WP=CE06137 /TR=Q21314 /GB=CAA94294.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 55      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 116.5
(3)
A 		47.8
(-3)
A 		52.1
(-2.6)
A 		72.8
(-0.8)
A 		69
B 155.1
(3)
A 		71.1
(-2.6)
A 		92
(-1.2)
A 		64.3
(-3)
A 		91
C 163.2
(3)
A 		79.7
(-0.4)
A 		59.4
(-1.2)
A 		16.6
(-3)
A 		147
avr 144.9
(3) 		66.2
(-2) 		67.8
(-1.9) 		51.2
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 281.6
(0.1)
A 		322.7
(0.6)
P 		493.6
(3)
P 		237.2
(-0.6)
A 		224.1
(-0.7)
A 		60.5
(-3)
A 		433
B 359.4
(1.6)
P 		280.6
(0.1)
P 		430.9
(3)
P 		260.1
(-0.2)
M 		221.4
(-1)
P 		115
(-3)
A 		316
C 427.8
(3)
P 		300.3
(0.6)
P 		384.7
(2.2)
P 		247.3
(-0.4)
P 		193.7
(-1.4)
A 		106.3
(-3)
A 		322
avr 356.3
(1.6) 		301.2
(0.6) 		436.4
(3) 		248.2
(-0.3) 		213.1
(-0.9) 		93.9
(-3) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 42.4
(3)
A 		10.4
(-3)
A 		13.6
(-2.4)
A 		10.7
(-2.9)
A 		32
B 49.5
(3)
A 		17.5
(-2.4)
A 		21.3
(-1.7)
A 		13.7
(-3)
A 		36
C 54
(3)
A 		22.9
(-0.6)
A 		20.7
(-0.9)
A 		2.8
(-3)
A 		51
avr 48.6
(3) 		16.9
(-1.8) 		18.5
(-1.6) 		9.1
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 51.9
(-0.8)
A 		114.8
(3)
P 		107.5
(2.6)
P 		60.2
(-0.3)
A 		67.6
(0.2)
A 		14.7
(-3)
A 		100
B 125.1
(3)
P 		93.4
(0.7)
P 		104.6
(1.5)
P 		68.9
(-1.1)
M 		90
(0.4)
P 		42.9
(-3)
A 		82
C 158.6
(3)
P 		91.6
(-0.3)
P 		97.9
(0)
P 		49.7
(-2.3)
P 		62.7
(-1.7)
A 		35.6
(-3)
A 		123
avr 111.9
(3) 		99.9
(2.1) 		103.3
(2.4) 		59.6
(-0.9) 		73.4
(0.1) 		31.1
(-3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8777
Sequence Type Exemplar sequence
Representative Public ID K08C7.4 NCBI
Target Description K08C7.4 /REP_DB=WormBase Gene ID /WP=CE06137 /TR=Q21314 /GB=CAA94294.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069570(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069570 NCBI Caenorhabditis elegans K08C7.4 (K08C7.4) mRNA, complete cds. 9/11 None
SNAP00000016924 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10679706:10680459:-1 10/11 None
GENEFINDER00000016928 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10679706:10680447:-1 9/11 None
K08C7.4 ENSEMBL cdna:known chromosome:CEL140:IV:10679303:10680447:-1 gene:K08C7.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10679711-10680453(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08C7.4
Entrez Gene 177957 Entrez gene
SwissProt Q21314 EMBL-EBI
WormBase CE35587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94294 Hypothetical protein K08C7.4 [Caenorhabditis elegans] ref|NP_501971.2| K08C7.4 [Caenorhabditis elegans] 8.0E-72
blast CAA94294 Hypothetical protein K08C7.4 [Caenorhabditis elegans] ref|NP_501971.2| K08C7.4 [Caenorhabditis elegans] 7.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178884_AT
aagaaagttgacgctgttggaccagccgccgatgctgatataactaaaccagagttggtc
gttccatcggaggatcctaaaaccgaagagattgagtctgttgaagagaaaactgttgag
aaatcaacagagaagcccgttgataagaaaggtgggcgtccggttcgtggaaagaagtct
ccaggatctgacgaagaggcgatggatggcgagtatgaagccgatgaagaagaggcggca
ctggagccaagaagaagcactcgcggaaagcgttcctacgatcaggagaccggaggaaga
tccgtgagaaaagttgtgaagaaggctaaggaagtcaacaagaaaccggagagagcacca
tcggcaaggtattctgtaaaacatcagttttcagtaaatgcctctgacactgactccgac
gaggaggcaaaagtcgtcaaacgcccaaccagcggacgtatgagcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAAGTTGACGCTGTTGGACCAG 306 151 25 Antisense
GACCAGCCGCCGATGCTGATATAAC 468 383 44 Antisense
TTGGTCGTTCCATCGGAGGATCCTA 390 707 79 Antisense
AGAAGTCTCCAGGATCTGACGAAGA 340 75 197 Antisense
GAAGAGGCGGCACTGGAGCCAAGAA 94 339 253 Antisense
GAAGCACTCGCGGAAAGCGTTCCTA 581 341 278 Antisense
AGCGTTCCTACGATCAGGAGACCGG 583 79 293 Antisense
GAGAGCACCATCGGCAAGGTATTCT 382 393 375 Antisense
AGTAAATGCCTCTGACACTGACTCC 423 61 417 Antisense
GAGGCAAAAGTCGTCAAACGCCCAA 564 399 448 Antisense
GCCCAACCAGCGGACGTATGAGCGG 78 287 467 Antisense
Sequence Source Affymetrix Proprietary Database