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[178883_at]

Description R105.2 /REP_DB=WormBase Gene ID /WP=CE07452 /TR=Q21896 /GB=AAA96167.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 49      6grp_total > 06      4grp_total > 37      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 148.1
(1.7)
P 		166.1
(3)
P 		85.6
(-3)
A 		161
(2.6)
A 		81
B 170.6
(3)
P 		137.2
(-0.7)
P 		156.4
(1.4)
P 		116.1
(-3)
A 		55
C 178.7
(2.9)
P 		180.3
(3)
A 		104.1
(-3)
A 		140.2
(-0.2)
P 		76
avr 165.8
(3) 		161.2
(2.5) 		115.4
(-3) 		139.1
(-0.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 184.7
(3)
M 		90.1
(-1.5)
A 		61.2
(-2.9)
A 		59.8
(-3)
A 		90.2
(-1.5)
A 		64.8
(-2.8)
A 		125
B 139.1
(3)
P 		102.6
(1)
P 		47.1
(-1.9)
A 		85
(0.1)
A 		27.5
(-3)
P 		64.6
(-1)
A 		112
C 129.4
(3)
P 		126.5
(2.8)
P 		114.8
(1.9)
A 		82.2
(-0.5)
A 		113.4
(1.8)
A 		49.2
(-3)
A 		80
avr 151.1
(3) 		106.4
(0.1) 		74.4
(-2) 		75.7
(-1.9) 		77
(-1.9) 		59.5
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 53.9
(3)
P 		36.1
(-0.4)
P 		22.4
(-3)
A 		23.6
(-2.8)
A 		32
B 54.4
(3)
P 		33.9
(-1.1)
P 		36.3
(-0.7)
P 		24.7
(-3)
A 		30
C 59.2
(3)
P 		51.8
(1.8)
A 		36.3
(-0.9)
A 		23.6
(-3)
P 		36
avr 55.8
(3) 		40.6
(0.1) 		31.7
(-1.5) 		24
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 34.1
(3)
M 		32
(2.4)
A 		13.3
(-3)
A 		15.2
(-2.5)
A 		27.2
(1)
A 		15.8
(-2.3)
A 		21
B 48.4
(3)
P 		34.2
(0.7)
P 		11.4
(-3)
A 		22.5
(-1.2)
A 		11.2
(-3)
P 		24.1
(-0.9)
A 		37
C 48
(3)
P 		38.6
(1.2)
P 		29.2
(-0.6)
A 		16.5
(-3)
A 		36.7
(0.8)
A 		16.5
(-3)
A 		32
avr 43.5
(3) 		34.9
(1) 		18
(-3) 		18.1
(-3) 		25
(-1.4) 		18.8
(-2.8) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10415
Sequence Type Exemplar sequence
Representative Public ID R105.2 NCBI
Target Description R105.2 /REP_DB=WormBase Gene ID /WP=CE07452 /TR=Q21896 /GB=AAA96167.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171322 NCBI Caenorhabditis elegans F19C7.8a (F19C7.8) mRNA, complete cds. 11/11 A 
SNAP00000002616 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4622837:4624109:-1 11/11 None
GENEFINDER00000002627 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4622699:4624109:-1 11/11 None
F19C7.8a ENSEMBL cdna:known chromosome:CEL140:IV:4610892:4624109:-1 gene:F19C7.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177226 2 1 NM_171322 178883_at (11)
NM_171323 174460_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4623130-4624115(-) 88.77 91.3
Public Domain and Genome References
Ensembl F19C7.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98032 Hypothetical protein F19C7.8a [Caenorhabditis elegans] ref|NP_741380.1| F19C7.8a [Caenorhabditis elegans] 0.0
blast AAM98033 Hypothetical protein F19C7.8b [Caenorhabditis elegans] ref|NP_741381.1| F19C7.8b [Caenorhabditis elegans] 1.0E-145
blast CAE58554 Hypothetical protein CBG01713 [Caenorhabditis briggsae] 1.0E-109
blast AAM98032 Hypothetical protein F19C7.8a [Caenorhabditis elegans] ref|NP_741380.1| F19C7.8a [Caenorhabditis elegans] 2.0E-96
blast T29987 hypothetical protein R105.2 - Caenorhabditis elegans 9.0E-96
blast AAM98032 Hypothetical protein F19C7.8a [Caenorhabditis elegans] ref|NP_741380.1| F19C7.8a [Caenorhabditis elegans] 2.0E-95
blast T29987 hypothetical protein R105.2 - Caenorhabditis elegans 2.0E-95
Sequence
Target Sequence 
>C. ELEGANS:178883_AT
tcagctcccagctatgcaacatacgctccgacataaccattcgatgggctcactaatggg
tccccgcgagctcccattcacccatggctaccatcataacccacatgctaggctgtcaca
gccagatattcactcagctatctatagaccccatcattactattccccgcccgtctaccc
cgggagccattaccacgggctctcaacttcccaacactcgagtcctctgtaccagcgccg
aatgcttccaacgccaaaaaacagtgggggaatcgcgcgaaaattgctgaaacggtgtac
gaatccagatttgatgagattacagagaaccaccgagattcgcgagcaatcagttggccg
gac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCTCCCAGCTATGCAACATACG 331 625 132 Antisense
AACATACGCTCCGACATAACCATTC 517 137 149 Antisense
CGATGGGCTCACTAATGGGTCCCCG 11 251 173 Antisense
TTCACCCATGGCTACCATCATAACC 342 685 208 Antisense
TCATAACCCACATGCTAGGCTGTCA 173 621 225 Antisense
GGCTGTCACAGCCAGATATTCACTC 633 539 242 Antisense
TTCACTCAGCTATCTATAGACCCCA 239 687 260 Antisense
TATAGACCCCATCATTACTATTCCC 142 655 274 Antisense
GAATGCTTCCAACGCCAAAAAACAG 371 331 371 Antisense
AGAGAACCACCGAGATTCGCGAGCA 708 67 455 Antisense
TTCGCGAGCAATCAGTTGGCCGGAC 544 689 470 Antisense
Sequence Source Affymetrix Proprietary Database