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[178882_at] 7TM chemoreceptor, srw family

Description W06G6.6 /REP_DB=WormBase Gene ID /WP=CE19010 /TR=Q9XU61 /GB=CAB05641.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 10      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 2.8
(-3)
A 		3.8
(-2.9)
A 		21.8
(-0.2)
A 		43.8
(3)
A 		41
B 5.9
(-2.1)
A 		26.2
(1.7)
A 		0.9
(-3)
A 		33.5
(3)
A 		33
C 8
(-2.6)
A 		6.9
(-2.7)
A 		3
(-3)
A 		76.4
(3)
P 		73
avr 5.6
(-3) 		12.3
(-2.1) 		8.6
(-2.6) 		51.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2.4
(-2.9)
A 		41.9
(3)
A 		2.4
(-2.9)
A 		25.6
(0.6)
A 		30.1
(1.2)
A 		40
B 16.8
(0.3)
A 		4.1
(-2.4)
A 		1.5
(-3)
A 		2.1
(-2.9)
A 		2
(-2.9)
A 		29.7
(3)
A 		28
C 3.3
(-2.4)
A 		17.4
(1.4)
A 		7.2
(-1.3)
A 		23.4
(3)
A 		0.9
(-3)
A 		1.2
(-2.9)
A 		23
avr 7.3
(-3) 		8
(-2.7) 		16.9
(1.4) 		9.3
(-2.1) 		9.5
(-2) 		20.3
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-2.8)
A 		0.8
(-3)
A 		5.7
(2.3)
A 		6.4
(3)
A 		6
B 1.9
(-1.5)
A 		6.5
(2.5)
A 		0.2
(-3)
A 		7.1
(3)
A 		7
C 2.6
(-2.2)
A 		2
(-2.5)
A 		1.1
(-3)
A 		12.9
(3)
P 		12
avr 1.8
(-3) 		3.1
(-1.9) 		2.3
(-2.6) 		8.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.8
(-2.7)
A 		9.1
(3)
A 		0.6
(-2.8)
A 		7.7
(2)
A 		7.3
(1.8)
A 		9
B 5.8
(0)
A 		1.4
(-2.4)
A 		0.4
(-3)
A 		0.6
(-2.9)
A 		0.8
(-2.8)
A 		11.1
(3)
A 		11
C 1.2
(-1.9)
A 		5.3
(3)
A 		1.8
(-1.2)
A 		4.7
(2.3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		5
avr 2.4
(-2.4) 		2.5
(-2.3) 		3.8
(-0.5) 		2
(-3) 		2.9
(-1.7) 		6.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12730
Sequence Type Exemplar sequence
Representative Public ID W06G6.6 NCBI
Target Description W06G6.6 /REP_DB=WormBase Gene ID /WP=CE19010 /TR=Q9XU61 /GB=CAB05641.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074808 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-76) (srw-76) mRNA, complete cds. 11/11 None
SNAP00000000228 ENSEMBL cdna:SNAP chromosome:CEL140:V:16638868:16640733:-1 9/11 None
W06G6.6 ENSEMBL cdna:known chromosome:CEL140:V:16639465:16640886:-1 gene:W06G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16639464-16640886(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-76
Ensembl W06G6.6
Entrez Gene 189256 Entrez gene
SwissProt Q9XU61 EMBL-EBI
WormBase CE19010 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05641 Hypothetical protein W06G6.6 [Caenorhabditis elegans] ref|NP_507209.1| Serpentine Receptor, class W family member (srw-76) [Caenorhabditis elegans] 1.0E-160
blast CAB05641 Hypothetical protein W06G6.6 [Caenorhabditis elegans] ref|NP_507209.1| Serpentine Receptor, class W family member (srw-76) [Caenorhabditis elegans] 1.0E-115
blast CAB05643 Hypothetical protein W06G6.8 [Caenorhabditis elegans] ref|NP_507211.1| Serpentine Receptor, class W family member (srw-77) [Caenorhabditis elegans] 5.0E-99
blast CAB05643 Hypothetical protein W06G6.8 [Caenorhabditis elegans] ref|NP_507211.1| Serpentine Receptor, class W family member (srw-77) [Caenorhabditis elegans] 4.0E-93
blast CAB76728 Hypothetical protein W06G6.13 [Caenorhabditis elegans] ref|NP_507208.1| Serpentine Receptor, class W family member (srw-75) [Caenorhabditis elegans] 3.0E-91
blast CAB76728 Hypothetical protein W06G6.13 [Caenorhabditis elegans] ref|NP_507208.1| Serpentine Receptor, class W family member (srw-75) [Caenorhabditis elegans] 3.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507209.1 7 15-37,49-68,105-122,134-156,166-185,205-227,242-264
W06G6.6 7 15-37,49-68,105-122,134-156,166-185,205-227,242-264
SNAP00000000228 5 54-71,83-105,159-176,196-218,233-255
Sequence
Target Sequence 
>C. ELEGANS:178882_AT
gatttcctgagagacaccggagaacgcgcttccttctggatgggtgtatttttggttcta
gtcagattacttatcacaaagattcctgagagtactgaacgtttatcaagttatgctttt
ggttatttaatttttattcttatgcttacagtacattctttgatttcgtatagttattat
cgggaatatcatcttgaagatagcacatggctaccgggagaagatattctgtaccccgtt
ttagccatatttttgatttttgatattaggaaatctgcgagaattgcatcggcggctcat
agcgaaaagaatgcaaaggaaagataccactctgggcgtatgattttgctgatgacaata
ttctacacaattactagtgctcctggaggaatatctgattttattcaaatttactgtcaa
gttccaacacattcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCCTGAGAGACACCGGAGAAC 600 427 301 Antisense
GGATGGGTGTATTTTTGGTTCTAGT 204 513 338 Antisense
GGTTCTAGTCAGATTACTTATCACA 408 507 354 Antisense
GATTCCTGAGAGTACTGAACGTTTA 301 433 381 Antisense
GCTTACAGTACATTCTTTGATTTCG 497 305 444 Antisense
TAGCACATGGCTACCGGGAGAAGAT 46 651 501 Antisense
GAGAAGATATTCTGTACCCCGTTTT 553 321 518 Antisense
AATTGCATCGGCGGCTCATAGCGAA 283 179 582 Antisense
ACTCTGGGCGTATGATTTTGCTGAT 52 101 629 Antisense
TCTACACAATTACTAGTGCTCCTGG 480 613 662 Antisense
TACTGTCAAGTTCCAACACATTCGA 475 647 712 Antisense
Sequence Source Affymetrix Proprietary Database