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[178881_at]

Description R193.3 /REP_DB=WormBase Gene ID /WP=CE23930 /TR=Q9N5F5 /GB=AAF39957.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 08      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 12.1
(-3)
A 		15.6
(-1.9)
A 		31
(3)
A 		14.5
(-2.2)
A 		19
B 11.8
(-1.9)
A 		9.8
(-3)
A 		12.8
(-1.4)
A 		21.1
(3)
A 		11
C 6.1
(-2.8)
A 		10.5
(-2.3)
A 		4.8
(-3)
A 		52.8
(3)
A 		48
avr 10
(-3) 		12
(-2.4) 		16.2
(-1.1) 		29.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 21.1
(2.2)
A 		18.9
(1.4)
A 		8.7
(-2)
A 		5.8
(-3)
A 		11.6
(-1)
A 		23.6
(3)
A 		18
B 30.4
(2.6)
A 		19.1
(0.1)
A 		15
(-0.8)
A 		4.9
(-3)
A 		10.8
(-1.7)
A 		32.2
(3)
M 		27
C 12.2
(-2.5)
A 		9.5
(-3)
A 		15.3
(-1.8)
A 		12
(-2.5)
A 		39.1
(3)
A 		18.2
(-1.2)
A 		30
avr 21.2
(1.8) 		15.8
(-0.1) 		13
(-1.1) 		7.6
(-3) 		20.5
(1.5) 		24.7
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.4
(-0.7)
A 		3.4
(-1.7)
A 		8.1
(3)
A 		2.1
(-3)
A 		6
B 3.7
(0.7)
A 		2.4
(-3)
A 		3
(-1.3)
A 		4.5
(3)
A 		2
C 2
(-2.8)
A 		3
(-1.9)
A 		1.7
(-3)
A 		8.9
(3)
A 		7
avr 3.4
(-1.7) 		2.9
(-3) 		4.3
(0.7) 		5.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.9
(-0.2)
A 		6.7
(3)
A 		1.9
(-2.5)
A 		1.5
(-3)
A 		3.5
(-0.7)
A 		5.8
(2)
A 		5
B 10.6
(2.2)
A 		6.4
(-0.1)
A 		3.6
(-1.7)
A 		1.3
(-3)
A 		4.4
(-1.3)
A 		12
(3)
M 		11
C 4.5
(-1.8)
A 		2.9
(-2.7)
A 		3.9
(-2.1)
A 		2.4
(-3)
A 		12.7
(3)
A 		6.1
(-0.8)
A 		10
avr 6.3
(1.4) 		5.3
(0.4) 		3.1
(-1.7) 		1.7
(-3) 		6.9
(2) 		8
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18180
Sequence Type Exemplar sequence
Representative Public ID R193.3 NCBI
Target Description R193.3 /REP_DB=WormBase Gene ID /WP=CE23930 /TR=Q9N5F5 /GB=AAF39957.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075818 NCBI Caenorhabditis elegans R193.3 (R193.3) mRNA, complete cds. 11/11 None
R193.3 ENSEMBL cdna:known chromosome:CEL140:X:1151544:1153542:-1 gene:R193.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008771 5/11 Cross Hyb Matching Probes None
SNAP00000008765 4/11 Cross Hyb Matching Probes None
SNAP00000008766 2/11 Cross Hyb Matching Probes None
GENEFINDER00000008770 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1151543-1153542(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R193.3
Entrez Gene 187921 Entrez gene
SwissProt Q9N5F5 EMBL-EBI
WormBase CE23930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39957 Hypothetical protein R193.3 [Caenorhabditis elegans] ref|NP_508219.1| R193.3 [Caenorhabditis elegans] 0.0
blast AAF39954 Hypothetical protein R193.1 [Caenorhabditis elegans] ref|NP_508220.1| R193.1 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508219.1 1 57-79
R193.3 1 57-79
Sequence
Target Sequence 
>C. ELEGANS:178881_AT
atattttttgttctcagctgctcattggaaacaagaacacgactatgatgaccgatcaca
ttgtggctggaaatcttagtgttatcatcagcaaggatgaaatgttctcaatgcaatcat
acttcgacgaatacaatctcgacagtgtgaaaattggtgccttcgacaccgcgctcgtat
ccgacttcaatctgcagaatccgttcaatccacacttgcatgctgaagcttacgcatcaa
tcaaagtggcacagggatcagtccaacaaaatgggacgattacaagaagaagaagtgata
tgaaaattgatgtgaattatggatatattcgtgaagcgtggtcacaaattgagaaatgtg
ctacccccgctggaatattcgatcaactcgtcaaagagtatccccatgttgattggttct
cgagtttcgatatgaaagattgcggggagaacgtgttgctcgaatttttagaaaaaaaaa
ttgcttgttcgtttgaaatagaacattttgaaactcaatctggaaatatatatttggtag
agcttgctcaacctcgtggatctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTTTTGTTCTCAGCTGCTCAT 595 19 506 Antisense
GATGACCGATCACATTGTGGCTGGA 400 411 552 Antisense
TCGTATCCGACTTCAATCTGCAGAA 258 603 680 Antisense
CAATCTGCAGAATCCGTTCAATCCA 452 181 693 Antisense
AATCCACACTTGCATGCTGAAGCTT 427 165 712 Antisense
GTGGCACAGGGATCAGTCCAACAAA 532 489 751 Antisense
AAATTGAGAAATGTGCTACCCCCGC 160 115 851 Antisense
TACCCCCGCTGGAATATTCGATCAA 632 649 867 Antisense
GTATCCCCATGTTGATTGGTTCTCG 418 455 903 Antisense
ATTGCGGGGAGAACGTGTTGCTCGA 372 5 944 Antisense
CTTGCTCAACCTCGTGGATCTATCA 237 219 1048 Antisense
Sequence Source Affymetrix Proprietary Database