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[178880_at]

Description W06G6.7 /REP_DB=WormBase Gene ID /WP=CE19011 /TR=Q9XU60 /GB=CAB05642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 6
(-2.9)
A 		5.1
(-3)
A 		20.6
(-1.2)
A 		56
(3)
A 		51
B 3.6
(-3)
A 		17.8
(1.5)
A 		14.7
(0.5)
A 		22.6
(3)
A 		19
C 5.9
(-3)
A 		43.9
(2.4)
A 		24.2
(-0.4)
A 		47.8
(3)
A 		42
avr 5.2
(-3) 		22.3
(-0.2) 		19.8
(-0.6) 		42.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.2
(-2.4)
A 		2.6
(-3)
A 		5.9
(-2.2)
A 		27.4
(3)
A 		5.6
(-2.3)
A 		5.1
(-2.4)
A 		25
B 7.4
(1.8)
A 		4.5
(-1.2)
A 		2.8
(-3)
A 		5.3
(-0.4)
A 		6.3
(0.7)
A 		8.5
(3)
A 		6
C 4.6
(-1.9)
A 		3.5
(-3)
A 		4
(-2.5)
A 		9.7
(3)
A 		4.6
(-1.9)
A 		5.5
(-1.1)
A 		6
avr 5.7
(-1.8) 		3.5
(-3) 		4.2
(-2.6) 		14.1
(3) 		5.5
(-1.9) 		6.4
(-1.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.2
(-2.1)
A 		1.1
(-3)
A 		5.4
(0.6)
A 		8.2
(3)
A 		7
B 1.2
(-3)
A 		4.4
(2.3)
A 		3.4
(0.7)
A 		4.8
(3)
A 		4
C 2
(-3)
A 		12.6
(3)
A 		8.4
(0.6)
A 		8.1
(0.5)
A 		11
avr 1.8
(-3) 		6
(1.8) 		5.7
(1.5) 		7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(-2.9)
A 		0.9
(-3)
A 		1.3
(-2.6)
A 		7
(3)
A 		1.7
(-2.2)
A 		1.2
(-2.7)
A 		6
B 2.6
(1.6)
A 		1.5
(-1.1)
A 		0.7
(-3)
A 		1.4
(-1.3)
A 		2.5
(1.3)
A 		3.2
(3)
A 		3
C 1.7
(1.7)
A 		1.1
(-2.3)
A 		1
(-3)
A 		1.9
(3)
A 		1.5
(0.3)
A 		1.8
(2.3)
A 		1
avr 1.8
(-1) 		1.2
(-2.5) 		1
(-3) 		3.4
(3) 		1.9
(-0.8) 		2.1
(-0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12838
Sequence Type Exemplar sequence
Representative Public ID W06G6.7 NCBI
Target Description W06G6.7 /REP_DB=WormBase Gene ID /WP=CE19011 /TR=Q9XU60 /GB=CAB05642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074809 NCBI Caenorhabditis elegans W06G6.7 (W06G6.7) mRNA, complete cds. 11/11 None
SNAP00000000230 ENSEMBL cdna:SNAP chromosome:CEL140:V:16642339:16643169:1 11/11 None
GENEFINDER00000000240 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16638976:16644219:1 11/11 None
W06G6.7 ENSEMBL cdna:known chromosome:CEL140:V:16641548:16643169:1 gene:W06G6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16641547-16643169(+) 99.39 100.0
Public Domain and Genome References
Gene Title
Ensembl W06G6.7
Entrez Gene 189257 Entrez gene
SwissProt Q9XU60 EMBL-EBI
WormBase CE19011 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05642 Hypothetical protein W06G6.7 [Caenorhabditis elegans] ref|NP_507210.1| W06G6.7 [Caenorhabditis elegans] 0.0
blast CAE59412 Hypothetical protein CBG02776 [Caenorhabditis briggsae] 0.0
blast CAE17802 Hypothetical protein F32A11.7 [Caenorhabditis elegans] ref|NP_001022132.1| F32A11.7 [Caenorhabditis elegans] 0.0
blast CAE61199 Hypothetical protein CBG04986 [Caenorhabditis briggsae] 1.0E-139
blast CAB05642 Hypothetical protein W06G6.7 [Caenorhabditis elegans] ref|NP_507210.1| W06G6.7 [Caenorhabditis elegans] 1.0E-124
blast CAE59412 Hypothetical protein CBG02776 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 4.1E-100
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000240 4 483-505,512-534,554-576,583-605
Sequence
Target Sequence 
>C. ELEGANS:178880_AT
atctttacaaaatctactcggctccctctcgacaaacaaagacacctctcaactcctcga
ctttatcattgaagccaccggagtcgatgaagcaatggaaagagtcgagacaaaaatcga
cgaatctttcggatcagaacgtggtccggaaggtcagccgctatatttcactaaggaaaa
tgttactgcaaactatccacatgaagctcaaaaattggaaatttttgaggctctagatag
aacctattcaacgtcacagctcaatgagatgaacagaacgggatatgcaattatgaggca
tgatcaaatggatttgatatacggagaccagtcaattgcgaaaaatccgaaatttctgaa
acaagccaaagcattgagcagggcagagattgatcgtagtataatgagtactataaaaga
cttggcgaaggagaaagtaaagtttcaagcgagaaggaatgatattgttctgtcgccagt
tacattttccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTTACAAAATCTACTCGGCTCC 351 27 543 Antisense
GCTCCCTCTCGACAAACAAAGACAC 246 299 563 Antisense
ACAAACAAAGACACCTCTCAACTCC 84 111 574 Antisense
CTCAACTCCTCGACTTTATCATTGA 90 229 590 Antisense
ATCATTGAAGCCACCGGAGTCGATG 110 27 607 Antisense
GACGAATCTTTCGGATCAGAACGTG 493 377 661 Antisense
CAGAACGTGGTCCGGAAGGTCAGCC 480 197 677 Antisense
GGTCAGCCGCTATATTTCACTAAGG 36 505 694 Antisense
GTTACTGCAAACTATCCACATGAAG 42 447 724 Antisense
TAGAACCTATTCAACGTCACAGCTC 249 653 780 Antisense
TCTGTCGCCAGTTACATTTTCCAAC 313 607 1011 Antisense
Sequence Source Affymetrix Proprietary Database