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[178879_at]

Description F43G9.5 /REP_DB=WormBase Gene ID /WP=CE10362 /TR=Q93716 /GB=CAB02106.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 57      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 638.1
(-3)
P 		817.2
(1.2)
P 		891.8
(3)
P 		674.9
(-2.1)
P 		254
B 680.3
(-1.7)
P 		800.4
(1.5)
P 		856.9
(3)
P 		632.6
(-3)
P 		224
C 701.4
(-0.1)
P 		810.5
(1.9)
P 		869.4
(3)
P 		548.7
(-3)
P 		321
avr 673.3
(-1.7) 		809.4
(1.5) 		872.7
(3) 		618.7
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 476.6
(-3)
P 		577.8
(-2)
P 		487.1
(-2.9)
P 		740.7
(-0.3)
P 		850.1
(0.8)
P 		1072.1
(3)
P 		596
B 643
(-1.4)
P 		508.3
(-3)
P 		556.2
(-2.4)
P 		678.2
(-1)
P 		839.3
(1)
P 		1010.3
(3)
P 		502
C 679.3
(-1.3)
P 		548.2
(-3)
P 		670.3
(-1.4)
P 		627
(-2)
P 		1017.6
(3)
P 		1005.8
(2.8)
P 		469
avr 599.6
(-2.3) 		544.8
(-3) 		571.2
(-2.7) 		682
(-1.3) 		902.3
(1.4) 		1029.4
(3) 		485
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 232.3
(3)
P 		177.4
(0.5)
P 		233.1
(3)
P 		98.8
(-3)
P 		134
B 216.9
(3)
P 		197.7
(1.6)
P 		198.6
(1.7)
P 		134.8
(-3)
P 		82
C 232.2
(1)
P 		233
(1)
P 		303
(3)
P 		92.5
(-3)
P 		211
avr 227.1
(2.2) 		202.7
(1.1) 		244.9
(3) 		108.7
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 87.9
(-3)
P 		205.5
(1.1)
P 		106.1
(-2.4)
P 		187.8
(0.5)
P 		256.5
(2.8)
P 		261
(3)
P 		173
B 223.7
(-0.8)
P 		169.2
(-2.2)
P 		135.1
(-3)
P 		179.6
(-1.9)
P 		341
(2.1)
P 		376.7
(3)
P 		242
C 251.8
(0.6)
P 		167.3
(-1.8)
P 		170.6
(-1.7)
P 		126.1
(-3)
P 		329.3
(2.8)
P 		336.7
(3)
P 		211
avr 187.8
(-1.4) 		180.7
(-1.6) 		137.3
(-3) 		164.5
(-2.1) 		308.9
(2.5) 		324.8
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2409
Sequence Type Exemplar sequence
Representative Public ID F43G9.5 NCBI
Target Description F43G9.5 /REP_DB=WormBase Gene ID /WP=CE10362 /TR=Q93716 /GB=CAB02106.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059933 NCBI Caenorhabditis elegans F43G9.5 (F43G9.5) mRNA, complete cds. 11/11 None
SNAP00000043538 ENSEMBL cdna:SNAP chromosome:CEL140:I:8623518:8624394:1 11/11 None
GENEFINDER00000043549 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8623518:8624394:1 11/11 None
F43G9.5 ENSEMBL cdna:known chromosome:CEL140:I:8623513:8624478:1 gene:F43G9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8623448-8624325(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43G9.5
Entrez Gene 172657 Entrez gene
SwissProt Q93716 EMBL-EBI
WormBase CE10362 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245235_AT expressed protein at
CANINE:1595871_S_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 21 cfa
CANINE:1595870_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 21 cfa
CANINE_2:CFA.10030.1.S1_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 21 cfa
CANINE_2:CFAAFFX.4869.1.S1_S_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 21 cfa
DROSOPHILA_2:1627850_AT dm
DROSGENOME1:141551_AT dm
CHICKEN:GGA.5287.1.S1_AT similar to cleavage and polyadenylation specific factor 5; cleavage and polyadenylation specific factor 5, 25 kD subunit gga
HG-U133_PLUS_2:213461_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U133A_2:213461_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-FOCUS:213461_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U133A:213461_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U133_PLUS_2:202697_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U133A:202697_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-FOCUS:202697_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U133A_2:202697_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HU35KSUBA:RC_AA436570_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HU35KSUBA:AA316862_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HU35KSUBB:RC_H05509_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
U133_X3P:G5901925_3P_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
U133_X3P:HS.301528.1.A1_3P_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
U133_X3P:HS.288061.1.S1_3P_X_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
U133_X3P:HS.288061.1.S1_3P_S_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
U133_X3P:HS.288061.1.S1_3P_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
U133_X3P:213461_3P_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U133_PLUS_2:224830_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U133B:224830_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U95AV2:39142_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U95C:64044_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U95E:90992_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U95B:42430_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HG-U95D:80880_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HU35KSUBA:AA418320_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
HU35KSUBD:RC_N21228_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 21 hs
MG-U74AV2:94506_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MG-U74BV2:105086_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MG-U74BV2:115827_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOE430A:1417681_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOUSE430A_2:1417681_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOUSE430_2:1417681_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOE430B:1428339_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOUSE430_2:1428339_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOE430B:1437213_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOUSE430_2:1437213_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOE430B:1455966_S_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
MOUSE430_2:1455966_S_AT nudix (nucleoside diphosphate linked moiety X)-type motif 21 mm
Protein Similarities
Method ID Description E-Value
blast CAB02106 Hypothetical protein F43G9.5 [Caenorhabditis elegans] ref|NP_492334.1| F43G9.5 [Caenorhabditis elegans] 1.0E-124
blast CAE67089 Hypothetical protein CBG12500 [Caenorhabditis briggsae] 1.0E-119
blast CAC70149 putative pre-mrna cleavage factor [Brugia malayi] 4.0E-79
Sequence
Target Sequence 
>C. ELEGANS:178879_AT
gaggctccagcgaactttgatgaaaaacctccgttcaatcgaacaatcaacgtgtatccg
ttgactaattacacatttggtactaaagatgcacaagcagaaaaagacaaatcagttcca
gaaaggttcaaacgaatgaaagacgaatatgaagtgatgggaatgcgtagatcagttgaa
gcggtgcttattgttcatgagcactcacttccacatatcctactcctgcagattggtacc
accttttataaattgccgggtggagaattggaacttggtgaggatgagatatctggagtc
acacgtcttctaaacgagacactcggaagaaccgatggggagacaaacgaatggacaatc
gaggatgagataggcaactggtggcgaccaaactttgatcctccccgttacccgtacatc
cctgcgcacgtgacaaaacccaaggagcacaccaagctgttgcttgttcagttgccctca
aaatcaacattctgcgttcccaaaaacttcaaactcgtcgcagctccactctttgaactt
tatgacaacgcagccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTCCAGCGAACTTTGATGAAA 220 405 67 Antisense
TGTTCATGAGCACTCACTTCCACAT 14 563 258 Antisense
TATCCTACTCCTGCAGATTGGTACC 158 657 282 Antisense
ATATCTGGAGTCACACGTCTTCTAA 246 21 355 Antisense
TGGTGGCGACCAAACTTTGATCCTC 73 551 445 Antisense
CTGCGCACGTGACAAAACCCAAGGA 708 227 488 Antisense
CAAGCTGTTGCTTGTTCAGTTGCCC 582 185 519 Antisense
AAAATCAACATTCTGCGTTCCCAAA 273 133 546 Antisense
CAAAAACTTCAAACTCGTCGCAGCT 460 191 567 Antisense
CAGCTCCACTCTTTGAACTTTATGA 40 205 587 Antisense
TGAACTTTATGACAACGCAGCCGCC 310 569 600 Antisense
Sequence Source Affymetrix Proprietary Database