[Home] | [Total List]

[178877_at]

Description F26D2.5 /REP_DB=WormBase Gene ID /WP=CE18638 /TR=Q9XV64 /GB=CAB04178.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 12      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 10
(-2.8)
A 		35.8
(-1.1)
A 		7.4
(-3)
A 		95.7
(3)
P 		88
B 56.2
(3)
A 		22.6
(-0.9)
A 		5
(-3)
A 		11.4
(-2.3)
A 		51
C 18.4
(-3)
A 		18.2
(-3)
A 		31.9
(-1.3)
A 		67.3
(3)
A 		49
avr 28.2
(-1.1) 		25.5
(-1.5) 		14.8
(-3) 		58.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 12.5
(-0.2)
A 		5.2
(-3)
A 		20.6
(3)
A 		8.9
(-1.6)
A 		6.8
(-2.4)
A 		12.3
(-0.2)
A 		15
B 9.1
(-1.4)
A 		25.5
(3)
A 		10.1
(-1.1)
A 		23.7
(2.5)
A 		3.1
(-3)
A 		7.1
(-1.9)
A 		22
C 13.9
(-2)
A 		15.3
(-1.9)
A 		70.7
(3)
A 		7.4
(-2.6)
A 		2.9
(-3)
A 		6.6
(-2.7)
A 		68
avr 11.8
(-1.5) 		15.3
(-0.8) 		33.8
(3) 		13.3
(-1.2) 		4.3
(-3) 		8.7
(-2.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.6
(-2.2)
A 		7.8
(-0.1)
A 		1.9
(-3)
A 		14
(3)
P 		12
B 17.9
(3)
A 		5.6
(-1.4)
A 		1.2
(-3)
A 		2.4
(-2.6)
A 		17
C 6.1
(-2.1)
A 		5.2
(-3)
A 		11.1
(2.7)
A 		11.4
(3)
A 		6
avr 9.2
(2.9) 		6.2
(-1) 		4.7
(-3) 		9.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.3
(-1.9)
A 		1.8
(-3)
A 		4.5
(3)
A 		2.3
(-1.9)
A 		2.1
(-2.3)
A 		3
(-0.3)
A 		3
B 3.2
(-1.4)
A 		8.5
(3)
A 		2.4
(-2.1)
A 		6.3
(1.2)
A 		1.3
(-3)
A 		2.7
(-1.8)
A 		7
C 5.2
(-1.5)
A 		4.7
(-1.7)
A 		18
(3)
A 		1.5
(-2.8)
A 		0.9
(-3)
A 		2.2
(-2.5)
A 		17
avr 3.6
(-1.1) 		5
(0.1) 		8.3
(3) 		3.4
(-1.3) 		1.4
(-3) 		2.6
(-2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13800
Sequence Type Exemplar sequence
Representative Public ID F26D2.5 NCBI
Target Description F26D2.5 /REP_DB=WormBase Gene ID /WP=CE18638 /TR=Q9XV64 /GB=CAB04178.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000037735 ENSEMBL cdna:SNAP chromosome:CEL140:V:16415498:16416369:1 11/11 None
F26D2.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16415270:16416369:1 gene:F26D2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037746 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16415269-16416369(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26D2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21401 hypothetical protein F26D2.5 - Caenorhabditis elegans 3.0E-98
blast CAB04175 Hypothetical protein F26D2.4 [Caenorhabditis elegans] ref|NP_507147.1| Serpentine Receptor, class H family member (srh-145) [Caenorhabditis elegans] 1.0E-82
blast CAB05794 Hypothetical protein T08G3.3 [Caenorhabditis elegans] ref|NP_507163.1| Serpentine Receptor, class H family member (srh-142) [Caenorhabditis elegans] 1.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.0E-95
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000037735 4 35-54,92-114,139-161,171-193
Sequence
Target Sequence 
>C. ELEGANS:178877_AT
cgcactgacgctacacatcgaagtcggaaaatcaaacgagcaattcactatttcctaact
taccttttatcgttcctagcattccttccagctgcactagaggagccagaccttgccaga
gctcgtgaatatgcccgccaaaaacttccctgttatcccccacaaataatcaatagccct
cgattttttatattaggaaatgacacgaccctctttctagcgggtgtgatcccttatcta
atcattggttggattcaaatcatgacattcttcattggaacttctagatttatctacaaa
accaaggcccaatccgagaggacttcaagtttgcagaagcaatttttcaaagccctctgt
attcaaattacgatccctatagtaattataatgatccccggcggatatgtaatttataca
agtgttagtggtaatttcgactcggctttaacccatatttcaattatttggatttcaact
catggactatttgctactgctgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCACTGACGCTACACATCGAAGTC 655 251 352 Antisense
CAATTCACTATTTCCTAACTTACCT 416 179 392 Antisense
TTACCTTTTATCGTTCCTAGCATTC 344 681 411 Antisense
GCACTAGAGGAGCCAGACCTTGCCA 238 315 445 Antisense
TGAATATGCCCGCCAAAAACTTCCC 567 573 477 Antisense
ATCCCCCACAAATAATCAATAGCCC 71 39 506 Antisense
TAGGAAATGACACGACCCTCTTTCT 57 653 545 Antisense
GACCCTCTTTCTAGCGGGTGTGATC 496 381 558 Antisense
GGGTGTGATCCCTTATCTAATCATT 525 497 573 Antisense
AGTAATTATAATGATCCCCGGCGGA 640 1 732 Antisense
ATGGACTATTTGCTACTGCTGTGAT 234 53 833 Antisense
Sequence Source Affymetrix Proprietary Database