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[178875_at]

Description T02G6.3 /REP_DB=WormBase Gene ID /WP=CE28072 /TR=O62357 /GB=CAB04672.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 8.3
(-3)
A 		111.3
(3)
A 		56.7
(-0.2)
A 		106.9
(2.7)
A 		103
B 45.8
(-1.5)
A 		21.6
(-2.9)
A 		19.2
(-3)
A 		127.1
(3)
A 		108
C 41.5
(-1.3)
A 		16.1
(-2.7)
A 		10.2
(-3)
A 		122.3
(3)
A 		112
avr 31.9
(-2.8) 		49.7
(-1.6) 		28.7
(-3) 		118.8
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 94.8
(3)
A 		6.1
(-3)
A 		69.2
(1.3)
A 		11.9
(-2.6)
A 		83.3
(2.2)
A 		13.5
(-2.5)
A 		89
B 9.8
(-3)
A 		11.8
(-2.8)
A 		24.9
(-1.7)
A 		53.3
(0.8)
A 		79.1
(3)
A 		15.6
(-2.5)
A 		69
C 43.9
(1.6)
A 		52.3
(3)
A 		16.6
(-3)
A 		29.7
(-0.8)
A 		19.5
(-2.5)
A 		37.3
(0.5)
A 		36
avr 49.5
(1.3) 		23.4
(-2.8) 		36.9
(-0.7) 		31.6
(-1.5) 		60.6
(3) 		22.1
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 3
(-3)
A 		24.2
(3)
A 		14.8
(0.3)
A 		15.6
(0.6)
A 		21
B 14.6
(-0.3)
A 		5.3
(-2.8)
A 		4.4
(-3)
A 		27.1
(3)
A 		23
C 13.7
(0.6)
A 		4.6
(-2.6)
A 		3.5
(-3)
A 		20.6
(3)
A 		17
avr 10.4
(-1.8) 		11.4
(-1.3) 		7.6
(-3) 		21.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.5
(1)
A 		2.2
(-3)
A 		15.1
(0.4)
A 		3
(-2.8)
A 		25.1
(3)
A 		3.3
(-2.7)
A 		23
B 3.4
(-3)
A 		3.9
(-2.9)
A 		6
(-2.5)
A 		14.1
(-0.8)
A 		32.1
(3)
A 		5.8
(-2.5)
A 		29
C 16.3
(3)
A 		15.9
(2.8)
A 		4.2
(-3)
A 		6
(-2.1)
A 		6.3
(-2)
A 		12.5
(1.1)
A 		12
avr 12.4
(-0.8) 		7.3
(-3) 		8.4
(-2.5) 		7.7
(-2.8) 		21.2
(3) 		7.2
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2010
Sequence Type Exemplar sequence
Representative Public ID T02G6.3 NCBI
Target Description T02G6.3 /REP_DB=WormBase Gene ID /WP=CE28072 /TR=O62357 /GB=CAB04672.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060601
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000017967 ENSEMBL cdna:SNAP chromosome:CEL140:I:11821649:11822476:1 None
GENEFINDER00000017978 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11821901:11822476:1 None
NM_060601 NCBI Caenorhabditis elegans T02G6.3 (T02G6.3) mRNA, complete cds. None
T02G6.3 ENSEMBL cdna:known chromosome:CEL140:I:11821901:11822476:1 gene:T02G6.3 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11817827-11822407(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G6.3
Entrez Gene 187998 Entrez gene
SwissProt O62357 EMBL-EBI
WormBase CE28072 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04672 Hypothetical protein T02G6.3 [Caenorhabditis elegans] ref|NP_493002.1| T02G6.3 [Caenorhabditis elegans] 1.0E-63
blast CAB04672 Hypothetical protein T02G6.3 [Caenorhabditis elegans] ref|NP_493002.1| T02G6.3 [Caenorhabditis elegans] 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:178875_AT
ggcgctggcatctccaaataggtgcagctccagcctgtgagcctgtaaatacagctctcc
aagtcgtcaataaggcatttttgaaaatgaaactcgcatcgaaaaaagttgctccagtac
caccagcacccaaggatccatcaaaaaagaaaaagaagaagccgggaacaggcaaaaggg
ggaaaagcaagaagctgtccgacttcctaattgagcaaaagactcagactctggatgaga
ccttcgagcagtctactaggccgcagctgaagccgaaggcagtgcctaagcgtcaaggtg
gaaaaggctttgatatcacgattagtcctgacaagactcaagcaacaatggaggagcccg
tgcctgtgaagaagggaaatgttcaggtaactgtacccgagaagagcaagatccgacagg
ccggccaggatttccatgagcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCTGGCATCTCCAAATAGGTGC 271 539 20 Antisense
CAGCTCCAGCCTGTGAGCCTGTAAA 39 205 44 Antisense
AATACAGCTCTCCAAGTCGTCAATA 496 171 67 Antisense
GAAAAAAGTTGCTCCAGTACCACCA 156 353 120 Antisense
AAGCTGTCCGACTTCCTAATTGAGC 117 149 211 Antisense
GAGACCTTCGAGCAGTCTACTAGGC 339 393 256 Antisense
TCTACTAGGCCGCAGCTGAAGCCGA 89 611 271 Antisense
GAAGGCAGTGCCTAAGCGTCAAGGT 406 333 294 Antisense
CAACAATGGAGGAGCCCGTGCCTGT 78 191 362 Antisense
AAGAGCAAGATCCGACAGGCCGGCC 703 151 421 Antisense
GCCGGCCAGGATTTCCATGAGCGGG 267 283 439 Antisense
Sequence Source Affymetrix Proprietary Database