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[178874_at]

Description T02G6.2 /REP_DB=WormBase Gene ID /WP=CE18173 /TR=O62355 /GB=CAB04670.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 25.4
(-3)
A 		24.6
(-3)
A 		39
(-2.2)
A 		130.3
(3)
A 		106
B 7.1
(-3)
A 		97
(3)
A 		9.5
(-2.8)
A 		27.2
(-1.7)
A 		90
C 12
(-3)
A 		24.7
(0.4)
A 		15.4
(-2.1)
A 		34.5
(3)
A 		23
avr 14.8
(-3) 		48.8
(1.1) 		21.3
(-2.2) 		64
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.1
(-3)
A 		7
(-2.5)
A 		18.8
(-0.8)
A 		12.3
(-1.7)
A 		14.4
(-1.4)
A 		45.7
(3)
A 		43
B 37.1
(3)
A 		10.9
(-3)
A 		13.9
(-2.3)
A 		33
(2.1)
A 		15.6
(-1.9)
A 		15.1
(-2)
A 		26
C 38.1
(2.1)
A 		27.3
(0.4)
A 		18
(-1.1)
A 		15.2
(-1.5)
A 		5.5
(-3)
A 		44.1
(3)
A 		39
avr 26.1
(0.7) 		15.1
(-2.1) 		16.9
(-1.7) 		20.2
(-0.8) 		11.8
(-3) 		35
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 9.2
(-1.3)
A 		5.3
(-3)
A 		10.2
(-0.9)
A 		19.1
(3)
A 		14
B 2.3
(-3)
A 		23.9
(3)
A 		2.2
(-3)
A 		5.8
(-2)
A 		22
C 4
(-3)
A 		7.1
(3)
A 		5.4
(-0.3)
A 		5.8
(0.5)
A 		3
avr 5.2
(-3) 		12.1
(3) 		5.9
(-2.4) 		10.2
(1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.5
(-1.9)
A 		4.1
(-1)
A 		3.1
(-1.6)
A 		4.3
(-0.9)
A 		11.1
(3)
A 		11
B 12.9
(3)
A 		3.6
(-2.9)
A 		3.4
(-3)
A 		8.7
(0.3)
A 		6.3
(-1.2)
A 		5.6
(-1.6)
A 		10
C 14.1
(2.7)
A 		8.3
(0)
A 		4.6
(-1.7)
A 		3.1
(-2.4)
A 		1.8
(-3)
A 		14.7
(3)
A 		13
avr 9.2
(1.8) 		4.8
(-2.3) 		4
(-3) 		5
(-2.1) 		4.1
(-2.9) 		10.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1801
Sequence Type Exemplar sequence
Representative Public ID T02G6.2 NCBI
Target Description T02G6.2 /REP_DB=WormBase Gene ID /WP=CE18173 /TR=O62355 /GB=CAB04670.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060599 NCBI Caenorhabditis elegans T02G6.2 (T02G6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017973 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11808149:11813113:-1 11/11 None
T02G6.2 ENSEMBL cdna:known chromosome:CEL140:I:11806963:11813113:-1 gene:T02G6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017965 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11806893-11813044(-) 94.92 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G6.2
Entrez Gene 187997 Entrez gene
SwissProt O62355 EMBL-EBI
WormBase CE18173 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04670 Hypothetical protein T02G6.2 [Caenorhabditis elegans] ref|NP_493000.1| T02G6.2 [Caenorhabditis elegans] 1.0E-169
blast CAB04670 Hypothetical protein T02G6.2 [Caenorhabditis elegans] ref|NP_493000.1| T02G6.2 [Caenorhabditis elegans] 1.0E-145
blast CAE69594 Hypothetical protein CBG15817 [Caenorhabditis briggsae] 6.0E-68
blast CAE69594 Hypothetical protein CBG15817 [Caenorhabditis briggsae] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:178874_AT
atcacgggacccagaacgccgtagagatagtacagtacgggtctcggtacgatccgaagg
cgccgccaacgggcagatcaagacggcgaactcggcgaatggagtgtcgttgacactgcc
acgtgtcaaaaaccatacgatacggtcgacggatacggtacctattgtaagggtacctgc
tggcaggccaagaccaccttcgaagatagagactagtcatgttgtcactggatccctatc
ccgacacctcaatgacgtctccggcaagagtgtggtcagagattcaaaatccggacaaat
gatgacagtccgggcaggaagtcagccacctggaaaagttacttatcagtataaaaaacg
agagcaactcgaaacatggaagagcaaaaaacgtgctccatcgacgagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACGGGACCCAGAACGCCGTAGA 32 27 372 Antisense
ACAGTACGGGTCTCGGTACGATCCG 136 107 403 Antisense
GGCAGATCAAGACGGCGAACTCGGC 553 535 443 Antisense
GTGTCGTTGACACTGCCACGTGTCA 314 485 475 Antisense
TACGGTCGACGGATACGGTACCTAT 533 303 512 Antisense
GGGTACCTGCTGGCAGGCCAAGACC 42 493 542 Antisense
GCCAAGACCACCTTCGAAGATAGAG 425 277 558 Antisense
TAGTCATGTTGTCACTGGATCCCTA 90 655 585 Antisense
GACGTCTCCGGCAAGAGTGTGGTCA 429 377 625 Antisense
CAGTCCGGGCAGGAAGTCAGCCACC 546 203 677 Antisense
AAAAACGTGCTCCATCGACGAGTGG 489 129 758 Antisense
Sequence Source Affymetrix Proprietary Database