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[178873_at]

Description C43F9.4 /REP_DB=WormBase Gene ID /WP=CE19732 /TR=Q9XUG7 /GB=CAB05151.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 0      6grp_highest_nonorm > 81      6grp_total > 81      4grp_total > 15      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 79.5
(3)
P 		60.4
(-0.6)
P 		48.1
(-3)
A 		60.2
(-0.7)
A 		31
B 71.6
(-0.6)
P 		60.4
(-3)
A 		88
(3)
P 		72
(-0.5)
P 		28
C 94.1
(2.6)
P 		60.4
(-3)
A 		70
(-1.4)
P 		96.3
(3)
P 		36
avr 81.7
(3) 		60.4
(-3) 		68.7
(-0.7) 		76.2
(1.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 754
1 2 3 4 5 6 range
A 61
(-3)
P 		74
(-2.9)
P 		167.2
(-2.1)
P 		794
(3)
P 		676.7
(2)
P 		191.2
(-1.9)
P 		733
B 57.3
(-3)
P 		114.4
(-2.5)
P 		141.1
(-2.3)
P 		807.6
(3)
P 		640
(1.7)
P 		91.3
(-2.7)
P 		750
C 54.1
(-3)
P 		140.2
(-2.2)
P 		131.3
(-2.3)
P 		672.1
(3)
P 		597.1
(2.3)
P 		124.2
(-2.3)
P 		618
avr 57.5
(-3) 		109.5
(-2.6) 		146.5
(-2.2) 		757.9
(3) 		637.9
(2) 		135.6
(-2.3) 		700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 28.9
(3)
P 		13.1
(-1.7)
P 		12.6
(-1.9)
A 		8.8
(-3)
A 		20
B 22.8
(3)
P 		14.9
(-3)
A 		20.4
(1.2)
P 		15.3
(-2.7)
P 		8
C 31.1
(3)
P 		17.4
(-2.5)
A 		24.4
(0.3)
P 		16.2
(-3)
P 		15
avr 27.6
(3) 		15.1
(-2.3) 		19.1
(-0.6) 		13.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 11.2
(-3)
P 		26.3
(-2.5)
P 		36.4
(-2.2)
P 		201.4
(2.9)
P 		204.2
(3)
P 		46.5
(-1.9)
P 		193
B 19.9
(-3)
P 		38.1
(-2.5)
P 		34.3
(-2.6)
P 		213.9
(1.8)
P 		260
(3)
P 		34
(-2.6)
P 		240
C 20
(-3)
P 		42.8
(-2.2)
P 		33.4
(-2.5)
P 		135.2
(1)
P 		193.2
(3)
P 		41.6
(-2.3)
P 		173
avr 17
(-3) 		35.7
(-2.4) 		34.7
(-2.5) 		183.5
(1.9) 		219.1
(3) 		40.7
(-2.3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9102
Sequence Type Exemplar sequence
Representative Public ID C43F9.4 NCBI
Target Description C43F9.4 /REP_DB=WormBase Gene ID /WP=CE19732 /TR=Q9XUG7 /GB=CAB05151.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069555
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069555 NCBI Caenorhabditis elegans C43F9.4 (C43F9.4) mRNA, complete cds. None
C43F9.4 ENSEMBL cdna:known chromosome:CEL140:IV:10587525:10589119:-1 gene:C43F9.4 None
GENEFINDER00000019778 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10587525:10589119:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019771 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10587530-10589125(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43F9.4
Entrez Gene 183414 Entrez gene
SwissProt Q9XUG7 EMBL-EBI
WormBase CE35429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05151 Hypothetical protein C43F9.4 [Caenorhabditis elegans] ref|NP_501956.2| C43F9.4 [Caenorhabditis elegans] 1.0E-176
blast CAE60756 Hypothetical protein CBG04443 [Caenorhabditis briggsae] 9.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501956.2 5 24-43,188-210,225-247,259-281,291-313
C43F9.4 5 24-43,188-210,225-247,259-281,291-313
GENEFINDER00000019778 5 24-43,188-210,225-247,259-281,291-313
Sequence
Target Sequence 
>C. ELEGANS:178873_AT
gataacttctcttcactcggaattcgataaagaatatctcacatttttccagccgtatgc
gttttcaatggtgggagcattcacatttcttgagatgctgatcgatcttcttcatgatgc
ttttgacggaagatttgtttttgtaagtttcaatagggattccgtggcgttttgtgcagt
ttttgtctcattcctgtctgcctacgtgcctgcgataaaatatgattttacaaagttttc
gtgtttcaaaaaacggttattccatgagttttttcataatctcacgatgttttttttaca
gattcaaactccgagattctacatcaaatccatcttctttgtcacattttcagcttgctt
tccgcatgttattctaacttggatgcagtttcaaaagctgaaaagatgtcacgcatatgt
tccactaattgatggattattcgaatacatttgtgctgctgcaatcattgcgtacaactt
tataaatgctcaaactcgaatacaaacgtttatttcgcctactgtaagagatgtccgtaa
tgtttcttcctattctagtgatgtctatagtcccgtttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAACTTCTCTTCACTCGGAATTC 250 423 630 Antisense
TTTTTCCAGCCGTATGCGTTTTCAA 352 675 673 Antisense
GATGCTGATCGATCTTCTTCATGAT 694 413 723 Antisense
ATAGGGATTCCGTGGCGTTTTGTGC 553 1 782 Antisense
TGCAGTTTTTGTCTCATTCCTGTCT 161 579 804 Antisense
TCTGCCTACGTGCCTGCGATAAAAT 317 609 826 Antisense
TTCTTTGTCACATTTTCAGCTTGCT 440 691 964 Antisense
TCAGCTTGCTTTCCGCATGTTATTC 335 625 979 Antisense
GATGTCACGCATATGTTCCACTAAT 652 409 1034 Antisense
ATGTCCGTAATGTTTCTTCCTATTC 571 45 1160 Antisense
AGTGATGTCTATAGTCCCGTTTGTT 667 59 1186 Antisense
Sequence Source Affymetrix Proprietary Database