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[178871_at]

Description F41D3.4 /REP_DB=WormBase Gene ID /WP=CE25882 /TR=O45508 /GB=CAB04375.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 54.8
(-1)
A 		14.5
(-3)
A 		21
(-2.7)
A 		135.7
(3)
A 		121
B 68.6
(-2.4)
A 		106.2
(1.9)
A 		63.3
(-3)
A 		115.7
(3)
A 		52
C 95.7
(-1.2)
A 		152.1
(3)
P 		70.7
(-3)
A 		102.6
(-0.6)
A 		81
avr 73
(-1.1) 		90.9
(0.5) 		51.7
(-3) 		118
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 104.7
(3)
A 		41.8
(-3)
A 		58.6
(-1.4)
M 		95.4
(2.1)
A 		74.6
(0.1)
A 		54.3
(-1.8)
A 		63
B 40.2
(-2.8)
A 		61.4
(2.1)
A 		57.8
(1.2)
A 		48.6
(-0.9)
A 		39.4
(-3)
A 		65.4
(3)
A 		26
C 56.4
(0.1)
A 		73.7
(2.2)
A 		43.1
(-1.6)
A 		80.2
(3)
A 		31.7
(-3)
A 		63.1
(0.9)
A 		49
avr 67.1
(1.3) 		59
(-0.6) 		53.2
(-1.9) 		74.7
(3) 		48.6
(-3) 		60.9
(-0.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 19.9
(3)
A 		3.1
(-3)
A 		5.5
(-2.1)
A 		19.9
(3)
A 		17
B 21.9
(0.8)
A 		26.2
(3)
A 		14.7
(-3)
A 		24.7
(2.2)
A 		12
C 31.7
(0.3)
A 		43.7
(3)
P 		24.6
(-1.3)
A 		17.3
(-3)
A 		26
avr 24.5
(3) 		24.3
(2.9) 		14.9
(-3) 		20.6
(0.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 19.3
(0.4)
A 		14.9
(-1.9)
A 		12.8
(-3)
M 		24.2
(3)
A 		22.5
(2.1)
A 		13.2
(-2.8)
A 		11
B 14
(-2.4)
A 		20.4
(0.9)
A 		14
(-2.4)
A 		12.9
(-3)
A 		16
(-1.4)
A 		24.4
(3)
A 		12
C 20.9
(2.2)
A 		22.5
(3)
A 		11
(-2.7)
A 		16.1
(-0.1)
A 		10.3
(-3)
A 		21.1
(2.3)
A 		12
avr 18.1
(1.7) 		19.3
(2.7) 		12.6
(-3) 		17.7
(1.4) 		16.3
(0.2) 		19.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2288
Sequence Type Exemplar sequence
Representative Public ID F41D3.4 NCBI
Target Description F41D3.4 /REP_DB=WormBase Gene ID /WP=CE25882 /TR=O45508 /GB=CAB04375.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060692 NCBI Caenorhabditis elegans F41D3.4 (F41D3.4) mRNA, complete cds. 11/11 None
SNAP00000037769 ENSEMBL cdna:SNAP chromosome:CEL140:I:12260102:12265302:-1 11/11 None
GENEFINDER00000037781 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12261797:12265302:-1 11/11 None
F41D3.4 ENSEMBL cdna:known chromosome:CEL140:I:12262628:12265302:-1 gene:F41D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12262558-12265233(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41D3.4
Entrez Gene 185604 Entrez gene
WormBase CE25882 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04375 Hypothetical protein F41D3.4 [Caenorhabditis elegans] ref|NP_493093.1| F41D3.4 [Caenorhabditis elegans] 0.0
blast CAB04373 Hypothetical protein F41D3.2 [Caenorhabditis elegans] ref|NP_493091.1| F41D3.2 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493093.1 9 13-32,37-54,77-96,136-158,170-192,196-213,238-260,285-307,316-333
F41D3.4 9 13-32,37-54,77-96,136-158,170-192,196-213,238-260,285-307,316-333
SNAP00000037769 9 13-32,37-54,77-96,136-158,170-192,196-213,238-260,285-307,316-333
GENEFINDER00000037781 9 13-32,37-54,77-96,136-158,170-192,196-213,238-260,285-307,316-333
Sequence
Target Sequence 
>C. ELEGANS:178871_AT
aatgcatgtgacccgttgtacttcacaagagccgcccacgccgaggacctttgccgaaag
aacttctcaaattttgaagagcgtgtacgtctggaacaaccggattatggattcatgctt
acaaggcacctggcgattggcgagctgcgtcctccaaatgtaacaaccttcgaggaagat
accgtataccaagttatgaagcagcaaatgttgaagtttgtctcaaatgtaaaacataaa
atctacattgttaacgccttcccaagaattgatcagtcagcagtggtgaaaattgcaaag
tggctgaaaaatggaacaagcccggaggaagttgataaacgcctattcacgtggaagtat
gcagaaattgaacagacccgctacgagctgatgcgggaaaggtacggtcaactggagaag
gattgcaacgggaagtgcgtgcttgtggactataagccgaaattcttcaatccacacact
gggctctacaggatgtttgatgatcgagggttttcgtattacaccatgggtctgcatttt
tcaccgcatggcattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCATGTGACCCGTTGTACTTCA 304 165 1423 Antisense
GCCGAGGACCTTTGCCGAAAGAACT 50 285 1462 Antisense
GCTTACAAGGCACCTGGCGATTGGC 121 305 1539 Antisense
CTGCGTCCTCCAAATGTAACAACCT 256 233 1567 Antisense
TACATTGTTAACGCCTTCCCAAGAA 34 643 1666 Antisense
ACAGACCCGCTACGAGCTGATGCGG 248 107 1794 Antisense
GGGAAGTGCGTGCTTGTGGACTATA 706 493 1852 Antisense
TAAGCCGAAATTCTTCAATCCACAC 431 637 1875 Antisense
TCCACACACTGGGCTCTACAGGATG 165 589 1893 Antisense
TACACCATGGGTCTGCATTTTTCAC 550 641 1942 Antisense
TGCATTTTTCACCGCATGGCATTGA 563 577 1955 Antisense
Sequence Source Affymetrix Proprietary Database