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[178870_s_at]

Description T06D8.7 /REP_DB=WormBase Gene ID /WP=CE02328 /TR=Q22252 /GB=CAA88970.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 86      6grp_total > 74      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1162
1 2 3 4 range
A 765.7
(-2.9)
P 		756.3
(-3)
P 		782.1
(-2.9)
P 		1789.7
(3)
P 		1033
B 986.2
(-1.5)
P 		793.5
(-3)
P 		828.1
(-2.7)
P 		1562.8
(3)
P 		769
C 710.8
(-2.6)
P 		627.7
(-3)
P 		726.6
(-2.5)
P 		1763.4
(3)
P 		1136
avr 820.9
(-2.4) 		725.8
(-3) 		778.9
(-2.7) 		1705.3
(3) 		980

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 924.9
(-2)
P 		873.6
(-3)
P 		1197.4
(3)
P 		1055.4
(0.4)
P 		994.3
(-0.8)
P 		901.8
(-2.5)
P 		324
B 754.1
(-3)
P 		831.9
(-1.3)
P 		815.2
(-1.7)
P 		1026.6
(3)
P 		970.1
(1.8)
P 		1011.4
(2.7)
P 		273
C 865.4
(-2.8)
P 		855.4
(-3)
P 		1007.4
(-0.7)
P 		1028.7
(-0.3)
P 		887
(-2.5)
P 		1245
(3)
P 		390
avr 848.1
(-3) 		853.6
(-2.8) 		1006.7
(1.7) 		1036.9
(2.5) 		950.5
(0) 		1052.7
(3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 278.8
(3)
P 		164.2
(-3)
P 		204.5
(-0.9)
P 		262
(2.1)
P 		115
B 314.5
(2.2)
P 		196
(-2.8)
P 		191.9
(-3)
P 		333
(3)
P 		141
C 235.3
(-0.2)
P 		180.5
(-3)
P 		253.2
(0.7)
P 		297.3
(3)
P 		117
avr 276.2
(1.9) 		180.2
(-3) 		216.5
(-1.1) 		297.4
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 170.5
(-3)
P 		310.7
(3)
P 		260.8
(0.9)
P 		267.7
(1.2)
P 		300
(2.5)
P 		219.5
(-0.9)
P 		140
B 262.4
(-1)
P 		276.9
(-0.6)
P 		197.9
(-3)
P 		271.9
(-0.7)
P 		394.2
(3)
P 		377.1
(2.5)
P 		196
C 320.8
(0.3)
P 		261
(-1.5)
P 		256.4
(-1.6)
P 		206.9
(-3)
P 		287
(-0.7)
P 		416.8
(3)
P 		210
avr 251.2
(-2.2) 		282.9
(-0.3) 		238.4
(-3) 		248.8
(-2.4) 		327.1
(2.4) 		337.8
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178870_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3251
Sequence Type Exemplar sequence
Representative Public ID T06D8.7 NCBI
Target Description T06D8.7 /REP_DB=WormBase Gene ID /WP=CE02328 /TR=Q22252 /GB=CAA88970.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064003 NCBI Caenorhabditis elegans T06D8.7 (T06D8.7) mRNA, complete cds. 11/11 None
SNAP00000001113 ENSEMBL cdna:SNAP chromosome:CEL140:II:11236691:11237225:-1 11/11 None
GENEFINDER00000001120 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11236691:11237225:-1 11/11 None
T06D8.7.1 ENSEMBL cdna:known chromosome:CEL140:II:11236529:11237227:-1 gene:T06D8.7 11/11 None
T06D8.7.2 ENSEMBL cdna:known chromosome:CEL140:II:11236663:11237229:-1 gene:T06D8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11236687-11237222(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D8.7
Entrez Gene 174714 Entrez gene
SwissProt Q22252 EMBL-EBI
WormBase CE02328 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88970 Hypothetical protein T06D8.7 [Caenorhabditis elegans] ref|NP_496404.1| T06D8.7 [Caenorhabditis elegans] 2.0E-72
blast CAE59547 Hypothetical protein CBG02943 [Caenorhabditis briggsae] 4.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR007014 EMBL-EBI FUN14 family 9.7E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496404.1 3 37-56,61-78,120-137
T06D8.7.1 3 37-56,61-78,120-137
T06D8.7.2 3 37-56,61-78,120-137
SNAP00000001113 3 37-56,61-78,120-137
GENEFINDER00000001120 3 37-56,61-78,120-137
Sequence
Target Sequence 
>C. ELEGANS:178870_S_AT
gagtgatgccatcgatacagtcctctactacgttgttgatctgaaaaagcagcagccgat
ggtccagctgggtgttggtgctggattcgggacagtgactggatattttgtcaccaaggg
aggacgtcttgttgctgccacagtgggaatctctttcctgttggctcaattcgctattca
caaaggatacatcacgctgaacgaatcaaaaatcgaacgagacatgaaaaatctacacaa
gtccgtcatgaacaaagtatccggcaagaaagttatcaacatttccgattcatttgtctc
cgaataccggtggattcttggcggattcgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGATGCCATCGATACAGTCCTC 602 401 66 Antisense
ATACAGTCCTCTACTACGTTGTTGA 5 25 80 Antisense
AGCAGCCGATGGTCCAGCTGGGTGT 161 77 116 Antisense
GGTGTTGGTGCTGGATTCGGGACAG 156 501 136 Antisense
CAAGGGAGGACGTCTTGTTGCTGCC 32 185 180 Antisense
GCTGCCACAGTGGGAATCTCTTTCC 497 297 199 Antisense
CTGTTGGCTCAATTCGCTATTCACA 370 239 223 Antisense
AAATCTACACAAGTCCGTCATGAAC 4 119 294 Antisense
AACATTTCCGATTCATTTGTCTCCG 6 139 343 Antisense
TTTGTCTCCGAATACCGGTGGATTC 281 633 358 Antisense
CGGTGGATTCTTGGCGGATTCGCAG 123 243 373 Antisense
Sequence Source Affymetrix Proprietary Database