[Home] | [Total List]

[178868_at]

Description F53B2.3 /REP_DB=WormBase Gene ID /WP=CE05917 /TR=Q20704 /GB=CAA98128.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 03      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 13
(-2.8)
A 		16.4
(-2.7)
A 		4.6
(-3)
A 		247.8
(3)
P 		243
B 51.3
(-2.2)
A 		45
(-2.3)
A 		17.5
(-3)
A 		270.4
(3)
P 		253
C 68
(-0.9)
A 		16.8
(-2.7)
A 		8.2
(-3)
A 		175.2
(3)
P 		167
avr 44.1
(-2.1) 		26.1
(-2.6) 		10.1
(-3) 		231.1
(3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 53.4
(2.1)
A 		20.7
(-1.5)
A 		17.9
(-1.8)
A 		61.3
(3)
A 		6.9
(-3)
A 		10.2
(-2.6)
A 		54
B 63.1
(3)
A 		45.2
(1.1)
A 		8
(-2.8)
A 		7.1
(-2.9)
A 		19.8
(-1.6)
A 		6.3
(-3)
A 		57
C 62
(3)
A 		30
(-0.8)
A 		15.2
(-2.5)
A 		10.9
(-3)
A 		44.9
(1)
A 		17.2
(-2.3)
A 		51
avr 59.5
(3) 		32
(-0.4) 		13.7
(-2.7) 		26.4
(-1.1) 		23.9
(-1.4) 		11.2
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 4.7
(-2.4)
A 		3.6
(-2.6)
A 		1.2
(-3)
A 		36.3
(3)
P 		35
B 16.4
(-1.6)
A 		11.1
(-2.2)
A 		4.1
(-3)
A 		57.6
(3)
P 		54
C 22.5
(1.4)
A 		4.8
(-2.6)
A 		2.8
(-3)
A 		29.5
(3)
P 		27
avr 14.5
(-1.2) 		6.5
(-2.4) 		2.7
(-3) 		41.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.8
(0.4)
A 		7.4
(-0.6)
A 		3.9
(-2.2)
A 		15.6
(3)
A 		2.1
(-3)
A 		2.5
(-2.8)
A 		14
B 22
(3)
A 		15
(0.9)
A 		1.9
(-3)
A 		1.9
(-3)
A 		8
(-1.2)
A 		2.4
(-2.9)
A 		20
C 23
(3)
A 		9.2
(-1)
A 		3.9
(-2.5)
A 		2.2
(-3)
A 		14.5
(0.5)
A 		5.8
(-2)
A 		21
avr 18.3
(3) 		10.5
(-0.1) 		3.2
(-3) 		6.6
(-1.6) 		8.2
(-1) 		3.6
(-2.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8360
Sequence Type Exemplar sequence
Representative Public ID F53B2.3 NCBI
Target Description F53B2.3 /REP_DB=WormBase Gene ID /WP=CE05917 /TR=Q20704 /GB=CAA98128.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069997 NCBI Caenorhabditis elegans F53B2.3 (F53B2.3) mRNA, complete cds. 11/11 None
SNAP00000026520 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12524450:12525481:-1 11/11 None
GENEFINDER00000026525 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12524450:12525481:-1 11/11 None
F53B2.3 ENSEMBL cdna:known chromosome:CEL140:IV:12524450:12525481:-1 gene:F53B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12524455-12525487(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B2.3
Entrez Gene 186150 Entrez gene
SwissProt Q20704 EMBL-EBI
WormBase CE05917 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98128 Hypothetical protein F53B2.3 [Caenorhabditis elegans] ref|NP_502398.1| F53B2.3 [Caenorhabditis elegans] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:178868_AT
caagtcgactattatctactcccacaggcaccgcggttgatgactgaggatttggataag
aaagagtttcagcgactctatgatgctcgttgtgagctcgttgagtgtccagccggaagg
cgtgcaatgcaactggatgttcagatctatgcggatcgttatgaggcgacgctcaacaag
attttggagacttctcaagagcttgacaaaggccttgaagacattttccaggcctacaca
aaagatgatccactggctgataaggttatgaactgccgcttgaccgtcgacgaaatggga
cgagtgtacgagcacttcttccgcgaatcggcatggaaccttgacagcttcgtggagtac
cggaagaatctggcacgagatgcctacttgctgcttgcggatctgaaaatcgcaatccaa
cgtctcggcatgcacttcaatccgaactttgaagacgcgcaagtcaaggtggacttccag
attatgcaggccgagcagatcatctttcacttcaaaaggacatacagggacgcactgaag
cacaaccctgactcgattacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTCGACTATTATCTACTCCCAC 62 185 151 Antisense
GGCACCGCGGTTGATGACTGAGGAT 85 535 177 Antisense
TCAGCGACTCTATGATGCTCGTTGT 386 625 219 Antisense
TGAGTGTCCAGCCGGAAGGCGTGCA 566 567 252 Antisense
TGAAGACATTTTCCAGGCCTACACA 319 575 366 Antisense
AGGTTATGAACTGCCGCTTGACCGT 502 1 413 Antisense
GACGAGTGTACGAGCACTTCTTCCG 502 379 449 Antisense
AACCTTGACAGCTTCGTGGAGTACC 618 143 487 Antisense
CTACTTGCTGCTTGCGGATCTGAAA 296 227 534 Antisense
GTCTCGGCATGCACTTCAATCCGAA 137 471 572 Antisense
AGCACAACCCTGACTCGATTACAGA 515 75 689 Antisense
Sequence Source Affymetrix Proprietary Database