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[178866_at]

Description F38H4.1 /REP_DB=WormBase Gene ID /WP=CE10058 /TR=Q20181 /GB=CAB01175.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 3.6
(-3)
A 		55.2
(-0.2)
A 		55.9
(-0.2)
A 		116.1
(3)
A 		113
B 8.8
(-3)
A 		34.8
(3)
A 		33.4
(2.7)
A 		12
(-2.3)
A 		26
C 29.6
(-2.7)
A 		22.6
(-3)
A 		24.3
(-2.9)
A 		163.6
(3)
P 		141
avr 14
(-3) 		37.5
(-1.3) 		37.9
(-1.3) 		97.2
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 7.6
(-2.5)
A 		2.9
(-3)
A 		63.9
(3)
A 		4.8
(-2.8)
A 		9.7
(-2.3)
A 		26.2
(-0.7)
A 		61
B 5.6
(-2.6)
A 		24
(0.6)
A 		38.4
(3)
A 		6.4
(-2.4)
A 		6
(-2.5)
A 		3.1
(-3)
A 		35
C 29.9
(-0.3)
A 		60.2
(3)
A 		9.1
(-2.6)
A 		38.1
(0.6)
A 		5.7
(-3)
A 		15.3
(-1.9)
A 		55
avr 14.4
(-1.5) 		29
(1.4) 		37.1
(3) 		16.4
(-1.1) 		7.1
(-3) 		14.9
(-1.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.3
(-3)
A 		12
(1.1)
A 		14.6
(2.1)
A 		17
(3)
A 		16
B 2.8
(-2.7)
A 		8.6
(3)
A 		7.7
(2.1)
A 		2.5
(-3)
A 		6
C 9.8
(-2.1)
A 		6.5
(-3)
A 		8.5
(-2.4)
A 		27.6
(3)
P 		21
avr 4.6
(-3) 		9
(-0.6) 		10.3
(0.1) 		15.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.4
(-2.8)
A 		1
(-3)
A 		13.9
(3)
A 		1.2
(-2.9)
A 		2.9
(-2.1)
A 		6.4
(-0.5)
A 		13
B 1.9
(-2.4)
A 		8
(2)
A 		9.3
(3)
A 		1.7
(-2.6)
A 		2.4
(-2)
A 		1.1
(-3)
A 		8
C 11.1
(0.3)
A 		18.4
(3)
A 		2.3
(-2.9)
A 		7.7
(-0.9)
A 		1.9
(-3)
A 		5.1
(-1.8)
A 		17
avr 4.8
(-0.9) 		9.1
(3) 		8.5
(2.5) 		3.5
(-2) 		2.4
(-3) 		4.2
(-1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9663
Sequence Type Exemplar sequence
Representative Public ID F38H4.1 NCBI
Target Description F38H4.1 /REP_DB=WormBase Gene ID /WP=CE10058 /TR=Q20181 /GB=CAB01175.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069838 NCBI Caenorhabditis elegans F38H4.1 (F38H4.1) mRNA, complete cds. 11/11 None
F38H4.1 ENSEMBL cdna:known chromosome:CEL140:IV:11837899:11838436:1 gene:F38H4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021889 3/11 Cross Hyb Matching Probes None
SNAP00000033623 2/11 Cross Hyb Matching Probes None
SNAP00000035031 2/11 Cross Hyb Matching Probes None
SNAP00000039257 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031332 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11837904-11838442(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38H4.1
Entrez Gene 185477 Entrez gene
SwissProt Q20181 EMBL-EBI
WormBase CE10058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01175 Hypothetical protein F38H4.1 [Caenorhabditis elegans] ref|NP_502239.1| F38H4.1 [Caenorhabditis elegans] 5.0E-93
Sequence
Target Sequence 
>C. ELEGANS:178866_AT
cgcgagcgcgagctaatcgctatttatgcgaagtctattgattttcctcacgtgcgcgaa
cggccaaacggtaaggtgatgggccagttatcaatcgacaggcagtggacaggttcaact
ccggctgagacagatagatttgctacaacgaaggatcaccggaagacggtctggagcaag
accggagctcggaggagcattgggaaagaaaaagggggcagctggagggtgaaaaaattt
tcccattttttagtctccttacggttcaattacggtccgttgacggaccgggaatcgaac
cgtgaactgttcttaaatttgagccgttcccggtccgtgaacggaccgttttgggcactt
tccgctttgcctttcaacaggtctcagaatcatttgtatggatttatttctggaaagacc
gagtggcagtggcaggtgtgtctcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCGAGCGCGAGCTAATCGCTATTT 470 255 16 Antisense
AAGTCTATTGATTTTCCTCACGTGC 527 157 46 Antisense
GGTGATGGGCCAGTTATCAATCGAC 692 499 90 Antisense
TCGACAGGCAGTGGACAGGTTCAAC 374 601 110 Antisense
CAGGTTCAACTCCGGCTGAGACAGA 86 207 125 Antisense
AGCAAGACCGGAGCTCGGAGGAGCA 430 73 190 Antisense
TAGTCTCCTTACGGTTCAATTACGG 187 651 266 Antisense
GGACCGGGAATCGAACCGTGAACTG 395 521 300 Antisense
TGTTCTTAAATTTGAGCCGTTCCCG 486 559 323 Antisense
CGCTTTGCCTTTCAACAGGTCTCAG 183 253 378 Antisense
TGGCAGTGGCAGGTGTGTCTCAAAG 208 545 439 Antisense
Sequence Source Affymetrix Proprietary Database