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[178865_at]

Description F47G9.2 /REP_DB=WormBase Gene ID /WP=CE16061 /TR=Q20547 /GB=CAA98484.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 33      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 7.1
(-3)
A 		33.3
(2.3)
A 		36.6
(3)
A 		35.1
(2.7)
A 		30
B 3.2
(-3)
A 		25.3
(0.7)
A 		38.8
(3)
A 		29.7
(1.5)
A 		36
C 5.4
(-2.8)
A 		32.8
(3)
A 		4.5
(-3)
A 		7
(-2.5)
A 		28
avr 5.2
(-3) 		30.5
(3) 		26.6
(2.1) 		23.9
(1.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.9
(-2.4)
A 		2.2
(-3)
A 		9.9
(-1.7)
A 		2.7
(-2.9)
A 		38.1
(3)
A 		18.8
(-0.2)
A 		36
B 22.4
(0.6)
A 		6.7
(-3)
A 		11
(-2)
A 		20.2
(0.1)
A 		33.2
(3)
A 		8.8
(-2.5)
A 		27
C 6.1
(-3)
A 		20.5
(2.6)
A 		6.7
(-2.8)
A 		21.1
(2.9)
A 		21.4
(3)
A 		6.3
(-2.9)
A 		15
avr 11.5
(-2.4) 		9.8
(-2.8) 		9.2
(-3) 		14.7
(-1.5) 		30.9
(3) 		11.3
(-2.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.6
(-3)
A 		7.2
(0.9)
A 		9.6
(3)
A 		5.1
(-0.9)
A 		7
B 1
(-3)
A 		6.3
(1)
A 		9
(3)
A 		6.3
(1)
A 		8
C 1.8
(-2.6)
A 		9.4
(3)
A 		1.6
(-2.7)
A 		1.2
(-3)
A 		8
avr 1.8
(-3) 		7.6
(3) 		6.7
(2.1) 		4.2
(-0.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		0.8
(-2.9)
A 		2.2
(-2.2)
A 		0.7
(-3)
A 		11.5
(3)
A 		4.6
(-0.8)
A 		11
B 7.8
(-0)
A 		2.2
(-3)
A 		2.7
(-2.7)
A 		5.4
(-1.3)
A 		13.5
(3)
A 		3.3
(-2.4)
A 		11
C 2.3
(-2.3)
A 		6.2
(2.2)
A 		1.7
(-3)
A 		4.2
(-0.1)
A 		6.9
(3)
A 		2.1
(-2.5)
A 		5
avr 3.7
(-1.9) 		3.1
(-2.4) 		2.2
(-3) 		3.4
(-2.1) 		10.6
(3) 		3.3
(-2.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14156
Sequence Type Exemplar sequence
Representative Public ID F47G9.2 NCBI
Target Description F47G9.2 /REP_DB=WormBase Gene ID /WP=CE16061 /TR=Q20547 /GB=CAA98484.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073477 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-141) (str-141) mRNA, complete cds. 11/11 None
GENEFINDER00000034559 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11324910:11326408:-1 11/11 None
F47G9.2 ENSEMBL cdna:known chromosome:CEL140:V:11324910:11326408:-1 gene:F47G9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034549 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11324909-11326408(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-141
Ensembl F47G9.2
Entrez Gene 185949 Entrez gene
SwissProt Q20547 EMBL-EBI
WormBase CE16061 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98484 Hypothetical protein F47G9.2 [Caenorhabditis elegans] ref|NP_505878.1| Seven TM Receptor family member (str-141) [Caenorhabditis elegans] 0.0
blast AAB70997 Seven tm receptor protein 148 [Caenorhabditis elegans] ref|NP_493898.1| Seven TM Receptor family member (str-148) [Caenorhabditis elegans] 3.0E-93
blast H88035 protein M01D1.1 [imported] - Caenorhabditis elegans 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505878.1 7 5-27,39-61,81-103,124-146,200-222,243-265,278-300
F47G9.2 7 5-27,39-61,81-103,124-146,200-222,243-265,278-300
GENEFINDER00000034559 7 5-27,39-61,81-103,124-146,200-222,243-265,278-300
Sequence
Target Sequence 
>C. ELEGANS:178865_AT
atttttgatcttcattccatgcgtaattacatacattctctggtttgaacttgtcgtttg
gggaatgtctgcgactatggaaaaacgaatctatttgaaagatgattttaaaaatatgta
tgaatcagattcaatgatgatatcttttattgctccgttgtactggaacaatggaccaaa
tagagagaaagtttggagatttaaagatgcagcctctgcactagtctgtactggaattat
tggatcattaacaactttaatttgcttcttcgcgttacgaatttatctaaaaatgcaaaa
agaaaaaggtcatatgagtaaaagaactctggaattgaacaggcagctttatataatgtt
atcaatccagactattgtcccatttataacaatgtacatcccagtgggtcttttcattgt
tctcccattttttgatatgggattaggtgcgtatgtgaattatcccagtgccagtatgtc
tttgtatcctgcaattgaaccattaattgcaatttattgtataaaagacttcagaaagac
tatagctaatttcttccggagagttcgtgttggtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTGATCTTCATTCCATGCGTA 425 15 390 Antisense
GAACTTGTCGTTTGGGGAATGTCTG 286 349 436 Antisense
ATATCTTTTATTGCTCCGTTGTACT 203 21 529 Antisense
AGATGCAGCCTCTGCACTAGTCTGT 433 67 594 Antisense
TTTAATTTGCTTCTTCGCGTTACGA 258 671 645 Antisense
ATCAATCCAGACTATTGTCCCATTT 271 27 750 Antisense
ATCCCAGTGGGTCTTTTCATTGTTC 348 37 787 Antisense
GTATGTGAATTATCCCAGTGCCAGT 564 455 840 Antisense
CAGTGCCAGTATGTCTTTGTATCCT 60 209 855 Antisense
GACTATAGCTAATTTCTTCCGGAGA 122 373 927 Antisense
CTTCCGGAGAGTTCGTGTTGGTCCA 709 201 942 Antisense
Sequence Source Affymetrix Proprietary Database