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[178864_at]

Description Y6B3B.1 /REP_DB=WormBase Gene ID /WP=CE20177 /TR=O18164 /GB=CAA21727.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 61.2
(2.4)
A 		8.5
(-3)
A 		27.9
(-1)
A 		67.1
(3)
A 		59
B 20.4
(0.5)
A 		32.6
(3)
A 		3.6
(-3)
A 		4.9
(-2.7)
A 		29
C 23.3
(-2.5)
A 		37.1
(-0.5)
A 		20.3
(-3)
A 		60.1
(3)
A 		40
avr 35
(1) 		26.1
(-1) 		17.3
(-3) 		44
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 33.9
(0.5)
A 		4.9
(-3)
A 		55.2
(3)
A 		34.6
(0.5)
A 		19.4
(-1.3)
A 		9.5
(-2.5)
A 		50
B 32.9
(1.1)
A 		22.4
(-0.5)
A 		45.7
(3)
A 		6.1
(-3)
A 		16.8
(-1.4)
A 		17.2
(-1.3)
A 		40
C 9.4
(-2.4)
A 		57.1
(3)
A 		8
(-2.6)
A 		20.1
(-1.2)
A 		4.2
(-3)
A 		29.3
(-0.2)
A 		53
avr 25.4
(0.1) 		28.1
(0.8) 		36.3
(3) 		20.3
(-1.2) 		13.5
(-3) 		18.7
(-1.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.3
(3)
A 		1.8
(-3)
A 		7.3
(-1.4)
A 		9.8
(-0.7)
A 		21
B 6.5
(1.8)
A 		8
(3)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		7
C 7.7
(-2)
A 		10.7
(3)
A 		7.1
(-3)
A 		10.1
(2)
A 		4
avr 12.2
(3) 		6.8
(-1.6) 		5.1
(-3) 		7
(-1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.3
(-0.3)
A 		1.7
(-3)
A 		12
(3)
A 		8.8
(1.1)
A 		5.8
(-0.6)
A 		2.3
(-2.7)
A 		10
B 11.4
(3)
A 		7.5
(0.6)
A 		11.1
(2.8)
A 		1.6
(-3)
A 		6.8
(0.2)
A 		6.4
(-0.1)
A 		10
C 3.5
(-2.2)
A 		17.4
(3)
A 		2
(-2.8)
A 		4
(-2)
A 		1.4
(-3)
A 		9.8
(0.2)
A 		16
avr 7.1
(0.4) 		8.9
(3) 		8.4
(2.3) 		4.8
(-2.9) 		4.7
(-3) 		6.2
(-0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.764
Sequence Type Exemplar sequence
Representative Public ID Y6B3B.1 NCBI
Target Description Y6B3B.1 /REP_DB=WormBase Gene ID /WP=CE20177 /TR=O18164 /GB=CAA21727.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060999 NCBI Caenorhabditis elegans Y6B3B.1 (Y6B3B.1) mRNA, complete cds. 11/11 None
SNAP00000016130 ENSEMBL cdna:SNAP chromosome:CEL140:I:13703815:13708387:-1 11/11 None
Y6B3B.1 ENSEMBL cdna:known chromosome:CEL140:I:13703815:13711456:-1 gene:Y6B3B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13703745-13710590(-) 98.94 99.33
Public Domain and Genome References
Gene Title
Ensembl Y6B3B.1
Entrez Gene 189366 Entrez gene
SwissProt O18164 EMBL-EBI
WormBase CE20177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21727 Hypothetical protein Y6B3B.1 [Caenorhabditis elegans] emb|CAB04901.1| Hypothetical protein Y6B3B.1 [Caenorhabditis elegans] ref|NP_493400.1| Y6B3B.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178864_AT
atcccagggatcccatgaagccgctcaggcttgtcgtcgatgctctgaagctgaccatca
tccttcagatgattccataatcgacctgatgatcgatacctcgaatccaagaagtcctcc
aatgccgtttttacccgaagagaagcccaatgcaatccaggcccatctccagaagctcgc
cgcctaccatgccttccggtgcctacctactcctgccatatcccgattcctgccccgccc
ccgccaaaacaccgaaccactcgtcgacatggataaatttttggattacatgatctggag
cctaggattcggagaatctctccgagttgccataaaacttccaagctggctcttcgctgt
ggagctcttcgagcagctgagcttcagggattcgaagctcgagctcagattcttgaaaaa
tgtggacttcgttggccaaatcctggggcaagctgtcatgtgggccaggaatgaggtggt
tattgaggaggagttgatccaaatcctcaataaccatggccaggctcgggagtacaactt
tttctatgccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCAGGGATCCCATGAAGCCGCT 517 37 4914 Antisense
TCAGGCTTGTCGTCGATGCTCTGAA 482 623 4938 Antisense
GATGCTCTGAAGCTGACCATCATCC 47 415 4952 Antisense
TACCTCGAATCCAAGAAGTCCTCCA 116 651 5010 Antisense
TCCAATGCCGTTTTTACCCGAAGAG 201 545 5031 Antisense
GAGAATCTCTCCGAGTTGCCATAAA 466 391 5225 Antisense
TAAAACTTCCAAGCTGGCTCTTCGC 158 641 5246 Antisense
GACTTCGTTGGCCAAATCCTGGGGC 697 369 5338 Antisense
TCCTGGGGCAAGCTGTCATGTGGGC 133 587 5354 Antisense
AACCATGGCCAGGCTCGGGAGTACA 617 143 5425 Antisense
GGAGTACAACTTTTTCTATGCCTTC 162 517 5442 Antisense
Sequence Source Affymetrix Proprietary Database