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[178863_at]

Description C17H1.2 /REP_DB=WormBase Gene ID /WP=CE15624 /TR=O45253 /GB=CAB07166.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 16.5
(2)
A 		18.5
(3)
A 		14.1
(0.7)
A 		6.9
(-3)
A 		12
B 7.5
(-2.1)
A 		3.9
(-2.8)
A 		2.5
(-3)
A 		37.2
(3)
M 		35
C 25.7
(3)
A 		5.6
(-2.6)
A 		11
(-1.1)
A 		4.2
(-3)
A 		22
avr 16.6
(3) 		9.3
(-2.9) 		9.2
(-3) 		16.1
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		0.9
(-3)
A 		10.2
(-2)
A 		56.1
(3)
P 		10.7
(-1.9)
A 		14.1
(-1.6)
A 		55
B 36.4
(3)
A 		4.1
(-3)
A 		4.4
(-2.9)
A 		15.6
(-0.9)
A 		20.3
(0)
A 		18.4
(-0.3)
A 		32
C 5.7
(-2.2)
A 		8.8
(-1.1)
A 		3.3
(-3)
A 		20.8
(3)
A 		7.6
(-1.5)
A 		19.9
(2.7)
A 		18
avr 14.6
(-0.7) 		4.6
(-3) 		6
(-2.7) 		30.8
(3) 		12.9
(-1.1) 		17.5
(-0) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6
(3)
A 		4
(0.6)
A 		3.7
(0.2)
A 		1
(-3)
A 		5
B 2.4
(-1.5)
A 		1
(-2.7)
A 		0.6
(-3)
A 		7.9
(3)
M 		7
C 8.5
(3)
A 		1.6
(-2.3)
A 		3.8
(-0.6)
A 		0.7
(-3)
A 		8
avr 5.6
(3) 		2.2
(-3) 		2.7
(-2.1) 		3.2
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.3
(-3)
A 		2.2
(-2.2)
A 		14.2
(3)
P 		3.2
(-1.7)
A 		3.4
(-1.7)
A 		14
B 12.7
(3)
A 		1.4
(-2.8)
A 		1.1
(-3)
A 		4.1
(-1.4)
A 		8.2
(0.7)
A 		6.9
(0)
A 		12
C 2.1
(-1.7)
A 		2.7
(-1.1)
A 		0.8
(-3)
A 		4.2
(0.5)
A 		2.5
(-1.3)
A 		6.7
(3)
A 		6
avr 5
(0.5) 		1.5
(-2.9) 		1.4
(-3) 		7.5
(3) 		4.6
(0.1) 		5.7
(1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.399
Sequence Type Exemplar sequence
Representative Public ID C17H1.2 NCBI
Target Description C17H1.2 /REP_DB=WormBase Gene ID /WP=CE15624 /TR=O45253 /GB=CAB07166.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060893 NCBI Caenorhabditis elegans C17H1.2 (C17H1.2) mRNA, complete cds. 11/11 None
SNAP00000005608 ENSEMBL cdna:SNAP chromosome:CEL140:I:13110911:13111179:-1 11/11 None
GENEFINDER00000005629 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13110911:13111179:-1 11/11 None
C17H1.2 ENSEMBL cdna:known chromosome:CEL140:I:13110911:13111179:-1 gene:C17H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13110841-13111110(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.2
Entrez Gene 182745 Entrez gene
SwissProt O45253 EMBL-EBI
WormBase CE15624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07166 Hypothetical protein C17H1.2 [Caenorhabditis elegans] ref|NP_493294.1| C17H1.2 [Caenorhabditis elegans] 3.0E-25
Sequence
Target Sequence 
>C. ELEGANS:178863_AT
gagaataccaacgtcttctccgagttcctttacgatattggagacttcttttcgggcaac
gatcgtaagcaggagaagcagttgcaggcagatctgcgagccgcacaggctgccgacttg
gaattccacaaaaatgagctggaagtatctgaaagacaggcagatgcgaatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATACCAACGTCTTCTCCGAGT 376 391 31 Antisense
TCTTCTCCGAGTTCCTTTACGATAT 161 617 44 Antisense
GAGTTCCTTTACGATATTGGAGACT 122 399 52 Antisense
ATTGGAGACTTCTTTTCGGGCAACG 267 3 67 Antisense
GACTTCTTTTCGGGCAACGATCGTA 128 369 73 Antisense
AAGCAGGAGAAGCAGTTGCAGGCAG 622 149 97 Antisense
TTGCAGGCAGATCTGCGAGCCGCAC 486 703 112 Antisense
CGCACAGGCTGCCGACTTGGAATTC 482 253 132 Antisense
GGCTGCCGACTTGGAATTCCACAAA 632 507 138 Antisense
ATGAGCTGGAAGTATCTGAAAGACA 374 45 164 Antisense
TGAAAGACAGGCAGATGCGAATCGC 442 571 180 Antisense
Sequence Source Affymetrix Proprietary Database