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[178862_at] G-protein coupled receptor, srg family

Description C34C6.1 /REP_DB=WormBase Gene ID /WP=CE03049 /TR=Q18428 /GB=CAA91262.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 31      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 57.7
(2.1)
P 		44
(0.4)
A 		65.4
(3)
A 		16.5
(-3)
A 		49
B 69.8
(3)
P 		46.3
(-0.3)
P 		38.7
(-1.3)
A 		26.6
(-3)
A 		43
C 40.2
(-0.5)
M 		5.9
(-3)
A 		21.9
(-1.8)
A 		86.9
(3)
A 		81
avr 55.9
(3) 		32.1
(-3) 		42
(-0.5) 		43.3
(-0.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 42.8
(3)
A 		18.5
(-0.8)
A 		34.6
(1.7)
A 		4.4
(-3)
A 		17.6
(-0.9)
A 		31.4
(1.2)
A 		38
B 44.1
(1.9)
A 		47.9
(3)
A 		37.6
(0.1)
P 		28.9
(-2.4)
A 		31.7
(-1.6)
A 		26.8
(-3)
A 		21
C 25.8
(-0.5)
A 		30.1
(0.5)
A 		41.2
(3)
A 		19.2
(-2)
A 		15
(-3)
A 		36.5
(1.9)
A 		26
avr 37.6
(2.9) 		32.2
(1.3) 		37.8
(3) 		17.5
(-3) 		21.4
(-1.8) 		31.6
(1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21
(3)
P 		9.5
(-0.7)
A 		17.1
(1.7)
A 		2.4
(-3)
A 		19
B 22.3
(3)
P 		11.4
(-0.9)
P 		9
(-1.8)
A 		5.7
(-3)
A 		17
C 13.3
(2.4)
M 		1.7
(-3)
A 		7.6
(-0.3)
A 		14.6
(3)
A 		13
avr 18.9
(3) 		7.5
(-3) 		11.2
(-1.1) 		7.6
(-2.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.9
(3)
A 		6.6
(1.9)
A 		7.5
(2.6)
A 		1.1
(-3)
A 		5.3
(0.7)
A 		7.6
(2.7)
A 		7
B 15.3
(2.5)
A 		16
(3)
A 		9.1
(-2)
P 		7.7
(-3)
A 		12.9
(0.8)
A 		10
(-1.3)
A 		8
C 9.6
(1.1)
A 		9.2
(0.8)
A 		10.5
(1.8)
A 		3.9
(-3)
A 		4.9
(-2.3)
A 		12.2
(3)
A 		8
avr 10.9
(3) 		10.6
(2.7) 		9
(1.3) 		4.2
(-3) 		7.7
(0.1) 		9.9
(2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2938
Sequence Type Exemplar sequence
Representative Public ID C34C6.1 NCBI
Target Description C34C6.1 /REP_DB=WormBase Gene ID /WP=CE03049 /TR=Q18428 /GB=CAA91262.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063450(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063450 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-15) (srg-15) mRNA, complete cds. 10/11 None
C34C6.1 ENSEMBL cdna:known chromosome:CEL140:II:8708992:8710336:-1 gene:C34C6.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8709326-8710432(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-15
Ensembl C34C6.1
Entrez Gene 183195 Entrez gene
SwissProt Q18428 EMBL-EBI
WormBase CE33033 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91262 Hypothetical protein C34C6.1 [Caenorhabditis elegans] ref|NP_495851.2| Serpentine Receptor, class G (gamma) family member (srg-15) [Caenorhabditis elegans] sp|Q18428|SRG15_CAEEL Serpentine receptor class gamma-15 (Protein srg-15) 1.0E-168
blast CAE73516 Hypothetical protein CBG20979 [Caenorhabditis briggsae] 2.0E-99
blast CAE73525 Hypothetical protein CBG20988 [Caenorhabditis briggsae] 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 5.6E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495851.2 7 26-48,60-82,92-114,151-173,201-223,235-257,267-289
C34C6.1 7 26-48,60-82,92-114,151-173,201-223,235-257,267-289
Sequence
Target Sequence 
>C. ELEGANS:178862_AT
gcactggattctgtttcgagcattataattgtttttattgattcattttacggtcgtctc
tttctttatgtccctccactttgtcccatcgttggcccatttttttgggcgtcatcatta
attccaaaaatatatttctacttgagtgttcacacaagattatctaaatgcgtagcccat
atatgtatggtattgaacagaatgacatgtgttctaatgccaacttattatggccagata
tggcgtaagttgaccaaagtgtctttagtgataatatgtattcttccattgggtggaact
tggaatataattatttccccaagattttacgttttaccatcttatggtggatttgctata
agctatgtcagagcaattccttgggcttcatcttctttgttccaatcaatttatatcctc
acagctcttgttttcacttttatatgtacatcagttactctctataagctcatttctcta
tctgatcgtataaaatcagctgaaaaatcgttatgtttctcaaatatttatatttctctc
acttttttagcagcggcagctagccaggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTGGATTCTGTTTCGAGCATTA 440 315 304 Antisense
GTTGGCCCATTTTTTTGGGCGTCAT 335 435 394 Antisense
GAATGACATGTGTTCTAATGCCAAC 237 331 503 Antisense
GATTTTACGTTTTACCATCTTATGG 442 427 626 Antisense
AGAGCAATTCCTTGGGCTTCATCTT 305 69 673 Antisense
GTTCCAATCAATTTATATCCTCACA 327 441 702 Antisense
TATATCCTCACAGCTCTTGTTTTCA 536 661 715 Antisense
GTTACTCTCTATAAGCTCATTTCTC 235 447 757 Antisense
AGCTCATTTCTCTATCTGATCGTAT 706 79 770 Antisense
ATTTCTCTCACTTTTTTAGCAGCGG 175 17 835 Antisense
TTAGCAGCGGCAGCTAGCCAGGCAA 232 617 850 Antisense
Sequence Source Affymetrix Proprietary Database