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[178861_at]

Description K02D3.2 /REP_DB=WormBase Gene ID /WP=CE06070 /TR=Q21130 /GB=CAA94145.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      6grp_total > 22      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 115.3
(-2)
P 		415.6
(1.8)
P 		515.3
(3)
P 		35.7
(-3)
A 		480
B 109.7
(-2.3)
A 		400.4
(0.6)
P 		640.4
(3)
P 		40.8
(-3)
A 		600
C 141.5
(-1.7)
M 		325.3
(0.7)
P 		498.7
(3)
P 		37.9
(-3)
A 		461
avr 122.2
(-2) 		380.4
(1) 		551.5
(3) 		38.1
(-3) 		513

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 274.2
(2.5)
P 		291.5
(3)
P 		273.7
(2.5)
P 		279.7
(2.7)
P 		197.4
(0.5)
P 		66
(-3)
A 		226
B 232.7
(1.5)
P 		286.6
(3)
P 		216.7
(1)
P 		262.8
(2.3)
P 		162.5
(-0.6)
P 		77.9
(-3)
P 		209
C 257.1
(1.2)
P 		290.4
(2)
P 		262
(1.3)
P 		329.3
(3)
P 		167.1
(-1.1)
P 		92.7
(-3)
A 		237
avr 254.7
(2) 		289.5
(3) 		250.8
(1.9) 		290.6
(3) 		175.7
(-0.3) 		78.9
(-3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 42
(-1.3)
P 		90.2
(0.9)
P 		134.7
(3)
P 		5.2
(-3)
A 		130
B 35
(-1.9)
A 		98.9
(0.9)
P 		148.4
(3)
P 		8.7
(-3)
A 		140
C 46.8
(-1.6)
M 		93.5
(0.1)
P 		173.8
(3)
P 		6.4
(-3)
A 		167
avr 41.3
(-1.6) 		94.2
(0.6) 		152.3
(3) 		6.8
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 50.6
(-0.6)
P 		103.7
(3)
P 		59.6
(-0)
P 		70.9
(0.8)
P 		59.6
(-0)
P 		16.1
(-3)
A 		88
B 81
(1.7)
P 		95.4
(3)
P 		52.6
(-0.9)
P 		69.6
(0.7)
P 		66
(0.3)
P 		29.1
(-3)
P 		66
C 95.3
(3)
P 		88.6
(2.4)
P 		66.7
(0.3)
P 		66.2
(0.3)
P 		54.1
(-0.8)
P 		31
(-3)
A 		64
avr 75.6
(1.3) 		95.9
(3) 		59.6
(-0.1) 		68.9
(0.7) 		59.9
(-0.1) 		25.4
(-3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17996
Sequence Type Exemplar sequence
Representative Public ID K02D3.2 NCBI
Target Description K02D3.2 /REP_DB=WormBase Gene ID /WP=CE06070 /TR=Q21130 /GB=CAA94145.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077892(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077892 NCBI Caenorhabditis elegans K02D3.2 (K02D3.2) mRNA, complete cds. 10/11 None
K02D3.2 ENSEMBL cdna:known chromosome:CEL140:X:13708641:13711884:-1 gene:K02D3.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025370 6/11 Cross Hyb Matching Probes None
SNAP00000025368 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13708640-13711884(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02D3.2
Entrez Gene 186873 Entrez gene
SwissProt Q21130 EMBL-EBI
WormBase CE35573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94145 Hypothetical protein K02D3.2 [Caenorhabditis elegans] ref|NP_510293.2| K02D3.2 [Caenorhabditis elegans] 1.0E-136
blast CAE63094 Hypothetical protein CBG07384 [Caenorhabditis briggsae] 1.0E-121
blast NP_001017679 hypothetical protein LOC550374 [Danio rerio] gb|AAH93326.1| Hypothetical protein LOC550374 [Danio rerio] 3.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR002913 EMBL-EBI Lipid-binding START 1.8E-53
Sequence
Target Sequence 
>C. ELEGANS:178861_AT
tcccaccagtggccaacatgatattgttgtttcagaaaaccggaagcatttggagcatga
gatgcaatgttatggataattacattttccgctacgaagggcgcattccgaacagaactt
gtgctgaggtttctgcaatgatacatccgcaagggcttcaccgcaacaaatgggactccc
aatcagcaggaacaagccttgtcgaagagatcagctatgatacatcagtgattcttcaca
aaacaaagggtagaatgatgggcttgatatctccacgtgaaacacttgatttgtgtcgtt
tcgcatatgatcctgttgatggcagccgttcggtagttatggttagtgtagatcatgaga
aatcgccaagaattgctggtgtggttcgagcccaaacttatcccacacttctcatgctta
atcccctaggcgacggtgtcaagatcacatcgattgtgcaagcagatttgtacctacaag
gtgttccacaaaccatcgttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCACCAGTGGCCAACATGATATT 226 597 275 Antisense
GAAGGGCGCATTCCGAACAGAACTT 634 335 370 Antisense
AATGATACATCCGCAAGGGCTTCAC 226 165 411 Antisense
AGGGCTTCACCGCAACAAATGGGAC 334 55 426 Antisense
ATGGGACTCCCAATCAGCAGGAACA 53 51 444 Antisense
GATGGGCTTGATATCTCCACGTGAA 205 409 531 Antisense
GTCGTTTCGCATATGATCCTGTTGA 349 473 569 Antisense
ATCCTGTTGATGGCAGCCGTTCGGT 625 37 584 Antisense
TTGCTGGTGTGGTTCGAGCCCAAAC 19 703 647 Antisense
ATCCCCTAGGCGACGGTGTCAAGAT 466 35 695 Antisense
AAGGTGTTCCACAAACCATCGTTGA 82 161 752 Antisense
Sequence Source Affymetrix Proprietary Database