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[178860_at]

Description F14B6.5 /REP_DB=WormBase Gene ID /WP=CE17667 /TR=O62164 /GB=CAB04108.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 23.4
(-2)
A 		18.1
(-3)
A 		20
(-2.6)
A 		50.6
(3)
A 		33
B 20.5
(-0.8)
A 		34.8
(0.9)
A 		1.9
(-3)
A 		52.6
(3)
A 		51
C 22.4
(-1.6)
A 		5.4
(-3)
A 		11.2
(-2.5)
A 		80.9
(3)
A 		76
avr 22.1
(-1.7) 		19.4
(-2) 		11
(-3) 		61.4
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 3.8
(-3)
A 		4.5
(-2.8)
A 		27.3
(3)
A 		6.7
(-2.3)
A 		5.3
(-2.6)
A 		6.2
(-2.4)
A 		24
B 1.8
(-3)
A 		10.2
(3)
A 		4.5
(-1.1)
A 		6.9
(0.6)
A 		2.9
(-2.2)
A 		1.8
(-3)
A 		8
C 16.7
(-1.5)
A 		61.1
(3)
A 		2.4
(-2.9)
A 		2.4
(-2.9)
A 		1.7
(-3)
A 		15.3
(-1.6)
A 		59
avr 7.4
(-1.9) 		25.3
(3) 		11.4
(-0.8) 		5.3
(-2.5) 		3.3
(-3) 		7.8
(-1.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.5
(3)
A 		3.9
(-3)
A 		5.2
(-1.3)
A 		7.4
(1.6)
A 		5
B 6.5
(0.4)
A 		8.6
(1.6)
A 		0.4
(-3)
A 		11.2
(3)
A 		11
C 7.4
(-0.1)
A 		1.6
(-3)
A 		3.9
(-1.9)
A 		13.6
(3)
A 		12
avr 7.5
(0.4) 		4.7
(-1.8) 		3.2
(-3) 		10.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.6
(-2)
A 		5.9
(3)
A 		1.7
(-1.8)
A 		1.6
(-2)
A 		1.5
(-2.1)
A 		5
B 0.6
(-3)
A 		3.4
(3)
A 		1.1
(-1.9)
A 		1.8
(-0.4)
A 		1.2
(-1.7)
A 		0.7
(-2.8)
A 		3
C 6.2
(-1.1)
A 		18.7
(3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		5.1
(-1.5)
A 		18
avr 2.5
(-1.8) 		7.9
(3) 		2.5
(-1.8) 		1.3
(-2.8) 		1.1
(-3) 		2.4
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1642
Sequence Type Exemplar sequence
Representative Public ID F14B6.5 NCBI
Target Description F14B6.5 /REP_DB=WormBase Gene ID /WP=CE17667 /TR=O62164 /GB=CAB04108.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060688 NCBI Caenorhabditis elegans F14B6.5 (F14B6.5) mRNA, complete cds. 11/11 None
SNAP00000017561 ENSEMBL cdna:SNAP chromosome:CEL140:I:12247282:12249930:1 11/11 None
GENEFINDER00000017564 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12247282:12250271:1 11/11 None
F14B6.5 ENSEMBL cdna:known chromosome:CEL140:I:12247282:12249930:1 gene:F14B6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12247212-12249861(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14B6.5
Entrez Gene 184447 Entrez gene
SwissProt O62164 EMBL-EBI
WormBase CE34171 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04108 Hypothetical protein F14B6.5 [Caenorhabditis elegans] ref|NP_493089.2| F14B6.5 [Caenorhabditis elegans] 0.0
blast CAB04376 Hypothetical protein F41D3.10 [Caenorhabditis elegans] emb|CAB04381.2| Hypothetical protein F41D3.5 [Caenorhabditis elegans] ref|NP_493098.1| F41D3.10 [Caenorhabditis elegans] ref|NP_493094.1| F41D3.5 [Caenorhabditis elegans] 0.0
blast AAB66028 Hypothetical protein C17A2.5 [Caenorhabditis elegans] ref|NP_494665.1| C17A2.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 9.7E-82
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.1E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493089.2 11 12-34,38-55,78-97,139-161,168-187,197-214,248-270,274-296,303-322,332-351,358-377
F14B6.5 11 12-34,38-55,78-97,139-161,168-187,197-214,248-270,274-296,303-322,332-351,358-377
SNAP00000017561 9 12-34,78-97,138-160,170-187,219-241,245-267,274-293,303-322,329-348
GENEFINDER00000017564 9 12-34,38-55,78-97,150-172,208-230,234-256,263-282,292-311,318-337
Sequence
Target Sequence 
>C. ELEGANS:178860_AT
tgaagcgttgtatccgactcttatcgaaaacgcaggatgtcctcaatattttgaagattt
tcaaaaaaggattaacgcggaaaagccggactatctattcatcatttcaagatacatatc
agttggtaaccctggaaacatcacaaacttcgaggaagacccaatttatcaaactatgaa
gaagcaacttctagggctggtggcaagtactcggcttaaagtttacattctcgacgcagt
acctagacacgacacatataagacaaaacttatcgcgcgttggttgaaggaaggtgtgat
tccactggaaattgataaacgacttggccaatccaatgctcaactgatcgacggatcctc
ctatgaactggcacgtcgcagatactcccagcttgtggcggactgtgatggccgatgtgt
tcttctggattataagccagatttctacaattcaatcaccgaatcgtaccggatattcga
cgacatgggatactcctacttcacatcatctcaacacttgacaccacatggcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCGTTGTATCCGACTCTTATC 492 573 1419 Antisense
AAAGCCGGACTATCTATTCATCATT 305 125 1500 Antisense
TAGGGCTGGTGGCAAGTACTCGGCT 351 637 1610 Antisense
TACATTCTCGACGCAGTACCTAGAC 332 643 1642 Antisense
TGGCCAATCCAATGCTCAACTGATC 30 545 1743 Antisense
TGATCGACGGATCCTCCTATGAACT 620 563 1763 Antisense
TGAACTGGCACGTCGCAGATACTCC 15 575 1782 Antisense
TGATGGCCGATGTGTTCTTCTGGAT 471 567 1824 Antisense
ACGACATGGGATACTCCTACTTCAC 558 91 1898 Antisense
CTACTTCACATCATCTCAACACTTG 287 227 1914 Antisense
TCAACACTTGACACCACATGGCTTG 88 629 1929 Antisense
Sequence Source Affymetrix Proprietary Database