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[178857_at]

Description T05A1.7 /REP_DB=WormBase Gene ID /WP=CE03627 /TR=Q22186 /GB=CAA92479.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 230
(3)
P 		53.6
(-2.2)
A 		24.5
(-3)
A 		94
(-1)
A 		206
B 158.1
(3)
P 		65.7
(-3)
A 		77.8
(-2.2)
A 		83.8
(-1.8)
P 		92
C 148.4
(3)
P 		73.3
(-1.7)
A 		51.8
(-3)
P 		116.6
(1)
A 		97
avr 178.8
(3) 		64.2
(-2.4) 		51.4
(-3) 		98.1
(-0.8) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 152.2
(3)
P 		94.5
(-0.1)
M 		84.4
(-0.7)
P 		63
(-1.8)
A 		41.5
(-3)
A 		49.4
(-2.6)
A 		111
B 114.5
(3)
P 		103
(1.9)
M 		78.5
(-0.3)
A 		92.8
(1)
P 		49.2
(-3)
A 		55.9
(-2.4)
M 		65
C 177
(3)
P 		102.8
(0.4)
P 		71.5
(-0.7)
A 		115.5
(0.8)
A 		5.5
(-3)
A 		47.5
(-1.5)
A 		172
avr 147.9
(3) 		100.1
(0.5) 		78.1
(-0.6) 		90.4
(0) 		32.1
(-3) 		50.9
(-2) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 83.7
(3)
P 		11.6
(-2.6)
A 		6.4
(-3)
A 		13.8
(-2.4)
A 		77
B 50.4
(3)
P 		16.2
(-3)
A 		18
(-2.7)
A 		17.9
(-2.7)
P 		34
C 49.1
(3)
P 		21.1
(-2.4)
A 		18.1
(-3)
P 		19.7
(-2.7)
A 		31
avr 61.1
(3) 		16.3
(-2.7) 		14.2
(-3) 		17.1
(-2.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 28
(1.4)
P 		33.6
(3)
M 		18.4
(-1.2)
P 		16
(-1.9)
A 		12.5
(-2.9)
A 		12
(-3)
A 		22
B 39.8
(3)
P 		34.3
(1.4)
M 		19.1
(-3)
A 		24.6
(-1.4)
P 		20
(-2.7)
A 		20.9
(-2.5)
M 		21
C 65.6
(3)
P 		31.4
(-0.2)
P 		18.2
(-1.5)
A 		23.2
(-1)
A 		1.8
(-3)
A 		15.9
(-1.7)
A 		64
avr 44.5
(3) 		33.1
(0.9) 		18.6
(-1.7) 		21.3
(-1.2) 		11.4
(-3) 		16.3
(-2.1) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9135
Sequence Type Exemplar sequence
Representative Public ID T05A1.7 NCBI
Target Description T05A1.7 /REP_DB=WormBase Gene ID /WP=CE03627 /TR=Q22186 /GB=CAA92479.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069297 NCBI Caenorhabditis elegans T05A1.7 (T05A1.7) mRNA, complete cds. 11/11 None
GENEFINDER00000033952 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9559064:9560338:1 9/11 None
T05A1.7 ENSEMBL cdna:known chromosome:CEL140:IV:9559064:9560185:1 gene:T05A1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033940 3/11 Cross Hyb Matching Probes None
SNAP00000033941 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9559069-9560191(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A1.7
Entrez Gene 3565998 Entrez gene
SwissProt Q22186 EMBL-EBI
WormBase CE03627 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92479 Hypothetical protein T05A1.7 [Caenorhabditis elegans] ref|NP_501698.1| T05A1.7 [Caenorhabditis elegans] 1.0E-143
blast CAE72777 Hypothetical protein CBG20032 [Caenorhabditis briggsae] 1.0E-132
blast CAA92479 Hypothetical protein T05A1.7 [Caenorhabditis elegans] ref|NP_501698.1| T05A1.7 [Caenorhabditis elegans] 4.0E-99
blast CAE72777 Hypothetical protein CBG20032 [Caenorhabditis briggsae] 6.0E-96
blast AAA20671 Hypothetical protein T22F7.1 [Caenorhabditis elegans] ref|NP_497209.1| T22F7.1 [Caenorhabditis elegans] 5.0E-51
blast CAE69236 Hypothetical protein CBG15279 [Caenorhabditis briggsae] 1.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501698.1 5 21-43,53-75,160-177,187-209,221-243
T05A1.7 5 21-43,53-75,160-177,187-209,221-243
GENEFINDER00000033952 7 20-42,49-71,86-108,115-134,144-166,175-197,202-224
Sequence
Target Sequence 
>C. ELEGANS:178857_AT
tgtacaactggccacatctgttccatgtgttctttttggaattctcatgatgtttactct
acccgaaagtttctcatttctggtggcaaaaagaaaacgagatgatttggtgaaatggat
agaaatggcatcaagagttggaaatgaagaaattgattatgatgctgatcagattgtgga
tatgataattgatttaatgatctacagtgctctttcactctcagcaacaggagttggctc
taataacatgcatctctcgtatattttttctggtctcgtcgaaattccttcttatttttt
gattcccgccgcaattgactggttaggaagaaaaccatccgtaatggtttctcatttgat
tcttgccttttcgctactctccatgtacctgtttgatcatgaggctgatccagaaatatt
cttgataatttggctcattgccaagtttgcagctgcatctgcatttatgctgtgtttcgt
ttacggagctgaacttttcccaacaaattgcagaagtatatgccttggtacttgtgcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACAACTGGCCACATCTGTTCCA 497 559 150 Antisense
CTCATGATGTTTACTCTACCCGAAA 203 229 193 Antisense
AAAGTTTCTCATTTCTGGTGGCAAA 186 121 215 Antisense
GCTCTTTCACTCTCAGCAACAGGAG 104 301 358 Antisense
CATGCATCTCTCGTATATTTTTTCT 320 211 396 Antisense
CTGGTCTCGTCGAAATTCCTTCTTA 74 241 419 Antisense
TTCCCGCCGCAATTGACTGGTTAGG 83 697 452 Antisense
TCATTTGATTCTTGCCTTTTCGCTA 134 621 501 Antisense
TACTCTCCATGTACCTGTTTGATCA 269 647 524 Antisense
GGCTCATTGCCAAGTTTGCAGCTGC 637 537 581 Antisense
GTATATGCCTTGGTACTTGTGCGAC 309 453 665 Antisense
Sequence Source Affymetrix Proprietary Database