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[178856_at]

Description C51F7.2 /REP_DB=WormBase Gene ID /WP=CE18557 /TR=Q9XTI1 /GB=CAA98961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 26      6grp_cgc > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 0.6
(-3)
A 		7.9
(-0.5)
A 		1.5
(-2.7)
A 		18.4
(3)
A 		18
B 1
(-3)
A 		6.6
(3)
A 		2.4
(-1.5)
A 		1.3
(-2.7)
A 		6
C 1.1
(-3)
A 		21
(-0.2)
A 		2.2
(-2.8)
A 		43.1
(3)
A 		42
avr 0.9
(-3) 		11.8
(0.3) 		2
(-2.7) 		20.9
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.8
(3)
A 		0.5
(-3)
A 		1.7
(0.1)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		1
(-1.7)
A 		2
B 15.2
(3)
A 		1.3
(-2.8)
A 		10.9
(1.2)
A 		1.1
(-2.9)
A 		1.7
(-2.7)
A 		0.9
(-3)
A 		14
C 2.7
(-2.4)
A 		2.4
(-2.5)
A 		6.7
(-0.9)
A 		17.4
(3)
A 		1
(-3)
A 		15.3
(2.2)
A 		16
avr 6.9
(3) 		1.4
(-2.7) 		6.4
(2.5) 		6.4
(2.5) 		1.1
(-3) 		5.7
(1.8) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.2
(-3)
A 		1.7
(0.6)
A 		0.4
(-2.5)
A 		2.7
(3)
A 		3
B 0.3
(-3)
A 		1.6
(3)
A 		0.5
(-2.1)
A 		0.3
(-3)
A 		1
C 0.4
(-3)
A 		6
(1.9)
A 		0.8
(-2.7)
A 		7.3
(3)
A 		7
avr 0.3
(-3) 		3.1
(2.4) 		0.6
(-2.4) 		3.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(3)
A 		0.2
(-3)
A 		0.4
(1)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.3
(-1)
A 		0
B 5.3
(3)
A 		0.4
(-2.9)
A 		2.6
(-0.2)
A 		0.3
(-3)
A 		0.7
(-2.5)
A 		0.3
(-3)
A 		5
C 1
(-2.1)
A 		0.7
(-2.5)
A 		1.7
(-1.3)
A 		3.5
(1)
A 		0.3
(-3)
A 		5.1
(3)
A 		5
avr 2.3
(3) 		0.4
(-3) 		1.6
(0.8) 		1.3
(-0.2) 		0.4
(-3) 		1.9
(1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12872
Sequence Type Exemplar sequence
Representative Public ID C51F7.2 NCBI
Target Description C51F7.2 /REP_DB=WormBase Gene ID /WP=CE18557 /TR=Q9XTI1 /GB=CAA98961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073685 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-45) (srg-45) mRNA, complete cds. 11/11 None
C51F7.2 ENSEMBL cdna:known chromosome:CEL140:V:12310078:12311246:1 gene:C51F7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12310077-12311246(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srg-45
Ensembl C51F7.2
Entrez Gene 183710 Entrez gene
SwissProt Q9XTI1 EMBL-EBI
WormBase CE18557 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98961 Hypothetical protein C51F7.2 [Caenorhabditis elegans] emb|CAA19423.1| Hypothetical protein C51F7.2 [Caenorhabditis elegans] ref|NP_506086.1| Serpentine Receptor, class G (gamma) family member (srg-45) [Caenorhabditis elegans] 1.0E-170
blast CAD60424 Hypothetical protein T19C4.9 [Caenorhabditis elegans] ref|NP_872229.1| Serpentine Receptor, class G (gamma) family member (srg-42) [Caenorhabditis elegans] 5.0E-96
blast CAB07199 Hypothetical protein F31E9.2 [Caenorhabditis elegans] ref|NP_507387.2| Serpentine Receptor, class G (gamma) family member (srg-44) [Caenorhabditis elegans] 1.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506086.1 8 7-29,39-61,68-90,100-122,129-148,173-195,216-238,248-270
C51F7.2 8 7-29,39-61,68-90,100-122,129-148,173-195,216-238,248-270
Sequence
Target Sequence 
>C. ELEGANS:178856_AT
gttcaatacgctttaacaactcttgtttctttgaatcggttgacagtattgtttaagtat
aacattttcgaaccgatttggaaaaaaattacatggttatttattctagttgcttatttt
gttccctttctcaacactcatattatttttcaaaataaattcacaattgactatctcaac
gaaagcgactcttacacattgcaaaccccaaatatgccattcatagaaatttacaatgta
ttaattccatttatgtgcatttgtatggcaatttcaattctttccaatactacaagtgtc
atatttttacgaaatctgaatattcaaagaaaaaaagcggaaacaaactttttactcata
atgtctataacatgtttagtccaacttattggaacaataatttctattgctttattgaag
tgcaactattgttctatgttatcatatcttacaatggttctaccatttgttagtgacggt
ttatctttggtgcaaccttggctgttgatttgttttagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATACGCTTTAACAACTCTTG 67 445 310 Antisense
AACTCTTGTTTCTTTGAATCGGTTG 529 139 327 Antisense
ACATGGTTATTTATTCTAGTTGCTT 649 105 400 Antisense
GACTATCTCAACGAAAGCGACTCTT 681 371 478 Antisense
AGCGACTCTTACACATTGCAAACCC 389 79 493 Antisense
GCAAACCCCAAATATGCCATTCATA 211 317 510 Antisense
ATTTCAATTCTTTCCAATACTACAA 219 15 580 Antisense
ATGGTTCTACCATTTGTTAGTGACG 107 51 763 Antisense
GTTAGTGACGGTTTATCTTTGGTGC 230 443 778 Antisense
TATCTTTGGTGCAACCTTGGCTGTT 491 659 791 Antisense
ACCTTGGCTGTTGATTTGTTTTAGT 472 87 804 Antisense
Sequence Source Affymetrix Proprietary Database