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[178855_at]

Description C15C8.5 /REP_DB=WormBase Gene ID /WP=CE05289 /TR=Q18019 /GB=CAA99776.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 64      6grp_total > 44      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 89.7
(-2)
P 		87
(-2.1)
A 		61.8
(-3)
P 		222.2
(3)
P 		160
B 76
(-1.3)
P 		79.6
(-0.8)
A 		65.8
(-3)
M 		102.7
(3)
P 		37
C 64.7
(-1.9)
P 		62.8
(-2)
A 		46.8
(-3)
P 		143.6
(3)
P 		97
avr 76.8
(-1.9) 		76.5
(-1.9) 		58.1
(-3) 		156.2
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 117.2
(1.1)
A 		54.2
(-2.7)
P 		149.9
(3)
P 		49.1
(-3)
A 		61.8
(-2.2)
P 		61.2
(-2.3)
A 		101
B 70.3
(-1.3)
P 		101.6
(3)
P 		85.6
(0.8)
P 		58.2
(-3)
A 		63
(-2.3)
P 		80.6
(0.1)
P 		43
C 59.2
(-2.3)
P 		78.7
(0.2)
P 		70.1
(-0.9)
P 		88.7
(1.5)
P 		54.1
(-3)
P 		100.7
(3)
P 		47
avr 82.2
(0.2) 		78.2
(-0.4) 		101.9
(3) 		65.3
(-2.2) 		59.6
(-3) 		80.8
(0) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 32.6
(3)
P 		18.9
(-2)
A 		16.1
(-3)
P 		32.5
(3)
P 		17
B 24.3
(3)
P 		19.7
(-0)
A 		15.2
(-3)
M 		21.9
(1.4)
P 		9
C 21.4
(0.9)
P 		18.1
(-1.6)
A 		16.3
(-3)
P 		24.2
(3)
P 		8
avr 26.1
(2.9) 		18.9
(-1.3) 		15.9
(-3) 		26.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 21.6
(-0.3)
A 		19.3
(-1)
P 		32.6
(3)
P 		12.5
(-3)
A 		18.6
(-1.2)
P 		14.9
(-2.3)
A 		20
B 24.5
(-0)
P 		33.8
(3)
P 		20.8
(-1.2)
P 		15.4
(-3)
A 		25.6
(0.3)
P 		30
(1.8)
P 		18
C 21.9
(-1.4)
P 		24
(-0.6)
P 		17.9
(-2.9)
P 		17.8
(-2.9)
P 		17.5
(-3)
P 		33.7
(3)
P 		16
avr 22.7
(1.1) 		25.7
(2.7) 		23.8
(1.7) 		15.2
(-3) 		20.6
(-0.1) 		26.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12597
Sequence Type Exemplar sequence
Representative Public ID C15C8.5 NCBI
Target Description C15C8.5 /REP_DB=WormBase Gene ID /WP=CE05289 /TR=Q18019 /GB=CAA99776.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073787 NCBI Caenorhabditis elegans C15C8.5 (C15C8.5) mRNA, complete cds. 11/11 None
SNAP00000030245 ENSEMBL cdna:SNAP chromosome:CEL140:V:12750882:12752553:1 11/11 None
GENEFINDER00000030248 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12750773:12752553:1 11/11 None
C15C8.5 ENSEMBL cdna:known chromosome:CEL140:V:12750882:12752553:1 gene:C15C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12750881-12752553(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C8.5
Entrez Gene 182636 Entrez gene
SwissProt Q18019 EMBL-EBI
WormBase CE05289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99776 Hypothetical protein C15C8.5 [Caenorhabditis elegans] ref|NP_506188.1| C15C8.5 [Caenorhabditis elegans] 0.0
blast CAE63986 Hypothetical protein CBG08578 [Caenorhabditis briggsae] 1.0E-166
blast CAE59945 Hypothetical protein CBG03432 [Caenorhabditis briggsae] 4.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506188.1 2 4-26,317-339
C15C8.5 2 4-26,317-339
SNAP00000030245 2 4-26,317-339
GENEFINDER00000030248 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:178855_AT
gtacatccaattattgccatgttacaaaaactgaaactttttctgaagaggaaaatcaaa
acactgaaatattgagtgtttcgaattgtggtgatatacctgaatttgacttcgacgttc
gactcaaaaattcaattgggtttccgggtctctattcaaatggttgttaccgtattcaag
ttgaaaaacgatcagcaatggttgattgtgtatgctcgaataataaatgtaatgaaatga
ttcccgaaatagaaactggtcatgtgagatgttacatgggaaaggatttcagaaatacga
gccaggtggattcccacgagttctgtgacggagatttttgtttaatacaagatgtacatg
gacgagtatcaaaaggatgcatttcattgaatgaacgaaatagttggagccatttaaaaa
gtggacatcgtcgaattcttggagttgaacaatggttatgccaggctcatttgtgcaatt
atgataccgaacgggcaatgaaatcggttagaagtatgagagctggcaagacgaattcag
ttcgaatgaatgcaagttacagtattttggtgttggcttcattgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATCCAATTATTGCCATGTTAC 292 461 413 Antisense
GAATTTGACTTCGACGTTCGACTCA 191 325 514 Antisense
TTCAATTGGGTTTCCGGGTCTCTAT 679 681 543 Antisense
TCCGGGTCTCTATTCAAATGGTTGT 185 595 555 Antisense
AATGGTTGTTACCGTATTCAAGTTG 35 163 571 Antisense
AATGGTTGATTGTGTATGCTCGAAT 357 163 609 Antisense
AATACGAGCCAGGTGGATTCCCACG 549 169 706 Antisense
GGATTCCCACGAGTTCTGTGACGGA 349 509 720 Antisense
GTTATGCCAGGCTCATTTGTGCAAT 601 445 867 Antisense
TGTGCAATTATGATACCGAACGGGC 607 555 884 Antisense
GTATTTTGGTGTTGGCTTCATTGAT 562 453 974 Antisense
Sequence Source Affymetrix Proprietary Database