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[178853_at]

Description F30F8.5 /REP_DB=WormBase Gene ID /WP=CE09817 /TR=Q93652 /GB=CAB03032.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 32      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 416
1 2 3 4 range
A 189.6
(-3)
A 		351.7
(-0.1)
P 		529.2
(3)
P 		452.3
(1.6)
A 		340
B 172.8
(-3)
A 		493.3
(1.9)
P 		564.2
(3)
P 		500.3
(2)
P 		391
C 179.4
(-3)
A 		397.2
(0.2)
P 		588.8
(3)
P 		513.5
(1.9)
P 		409
avr 180.6
(-3) 		414.1
(0.7) 		560.7
(3) 		488.7
(1.9) 		380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 239.2
(-3)
A 		371.4
(-0.5)
P 		562.8
(3)
P 		502.8
(1.9)
P 		470.2
(1.3)
P 		282.1
(-2.2)
P 		324
B 172.2
(-3)
A 		467.3
(0.7)
P 		650.5
(3)
P 		474.7
(0.8)
P 		480
(0.9)
P 		295.3
(-1.5)
P 		478
C 250.2
(-3)
M 		392.8
(0.3)
P 		511
(3)
P 		413.9
(0.8)
P 		443.2
(1.4)
P 		308
(-1.7)
P 		261
avr 220.5
(-3) 		410.5
(0.2) 		574.8
(3) 		463.8
(1.1) 		464.5
(1.1) 		295.1
(-1.7) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 69
(-2.8)
A 		76.4
(-2.2)
P 		138.3
(3)
P 		66.2
(-3)
A 		72
B 55.1
(-3)
A 		121.8
(2.3)
P 		130.7
(3)
P 		106.6
(1.1)
P 		76
C 59.4
(-3)
A 		114.2
(-0.7)
P 		205.2
(3)
P 		86.6
(-1.9)
P 		146
avr 61.2
(-3) 		104.1
(-0.3) 		158.1
(3) 		86.5
(-1.4) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 44.1
(-3)
A 		132.1
(2.4)
P 		122.6
(1.8)
P 		127.5
(2.1)
P 		141.9
(3)
P 		68.7
(-1.5)
P 		98
B 59.9
(-3)
A 		155.5
(1.2)
P 		158
(1.4)
P 		125.7
(-0.1)
P 		195
(3)
P 		110.1
(-0.8)
P 		135
C 92.7
(-2.1)
M 		119.9
(0.7)
P 		130.1
(1.7)
P 		83.2
(-3)
P 		143.4
(3)
P 		103.1
(-1)
P 		60
avr 65.6
(-3) 		135.8
(1.5) 		136.9
(1.5) 		112.1
(-0) 		160.1
(3) 		94
(-1.2) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1547
Sequence Type Exemplar sequence
Representative Public ID F30F8.5 NCBI
Target Description F30F8.5 /REP_DB=WormBase Gene ID /WP=CE09817 /TR=Q93652 /GB=CAB03032.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059767 NCBI Caenorhabditis elegans F30F8.5 (F30F8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000014214 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7855443:7856979:-1 11/11 None
SNAP00000014208 ENSEMBL cdna:SNAP chromosome:CEL140:I:7856112:7857054:-1 11/11 None
F30F8.5 ENSEMBL cdna:known chromosome:CEL140:I:7855399:7856979:-1 gene:F30F8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7856103-7856910(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F30F8.5
Entrez Gene 185130 Entrez gene
SwissProt Q93652 EMBL-EBI
WormBase CE37511 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03032 Hypothetical protein F30F8.5 [Caenorhabditis elegans] ref|NP_492168.2| F30F8.5 [Caenorhabditis elegans] 1.0E-139
blast CAB03032 Hypothetical protein F30F8.5 [Caenorhabditis elegans] ref|NP_492168.2| F30F8.5 [Caenorhabditis elegans] 1.0E-138
blast CAB03032 Hypothetical protein F30F8.5 [Caenorhabditis elegans] ref|NP_492168.2| F30F8.5 [Caenorhabditis elegans] 1.0E-130
blast CAE56123 Hypothetical protein CBG23732 [Caenorhabditis briggsae] 3.0E-84
blast CAE56123 Hypothetical protein CBG23732 [Caenorhabditis briggsae] 4.0E-84
blast CAE71818 Hypothetical protein CBG18852 [Caenorhabditis briggsae] 9.0E-71
Sequence
Target Sequence 
>C. ELEGANS:178853_AT
aaatctgattgctctacgccggagaaacagaatggagcagttggaaatgagcagcagatg
aataattcaacttctacaaggagaactgatagcaacaaaaacctgtcaccacctcctcaa
cgtcttcgtacatctagtagtacatctgacggaactgaaaatctaatttcctctctatca
tcttgggattgggttaccatagatggtctgaagcttcccgcagtgacacgtaataaagaa
cgttatgtggctgtccatatggtccagctgaaactactgagcaagttcccatcggatatt
ccacgtgacatcacacgaaaattcacgatgggatctcacaaaatgacagtaacagaagca
tggacattcaatacaattaacgctgtcattagaaagtttgatcttggttgtcagttattt
acggcaaatgatgaacttgtcaaactgaatgatgttcaaatgttctattggaatgtaaag
cttttcaatttgaaacgtgtcaatgggcaatatgagacggctatttcgtcagcagagaat
aatgttcaactactggcaacagcgatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTGATTGCTCTACGCCGGAGA 419 115 112 Antisense
TAGCAACAAAAACCTGTCACCACCT 573 649 201 Antisense
AAAATCTAATTTCCTCTCTATCATC 455 133 269 Antisense
ATTTCCTCTCTATCATCTTGGGATT 477 17 277 Antisense
CATAGATGGTCTGAAGCTTCCCGCA 50 215 309 Antisense
AAGCTTCCCGCAGTGACACGTAATA 689 149 322 Antisense
GTGGCTGTCCATATGGTCCAGCTGA 609 491 358 Antisense
ACTACTGAGCAAGTTCCCATCGGAT 671 101 384 Antisense
GTTCCCATCGGATATTCCACGTGAC 10 443 396 Antisense
GAGACGGCTATTTCGTCAGCAGAGA 47 395 625 Antisense
GTTCAACTACTGGCAACAGCGATGC 434 443 655 Antisense
Sequence Source Affymetrix Proprietary Database