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[178852_s_at]

Description D1081.9 /REP_DB=WormBase Gene ID /WP=CE23619 /TR=Q9U3L0 /GB=CAB54207.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 20.3
(-1.9)
A 		9.8
(-2.7)
A 		6.3
(-3)
A 		84.5
(3)
A 		78
B 61.8
(1.7)
A 		17.6
(-2.6)
A 		13.6
(-3)
A 		74.6
(3)
A 		61
C 35.9
(-1.4)
A 		20.1
(-3)
A 		46.7
(-0.3)
A 		79.8
(3)
A 		60
avr 39.3
(-0.8) 		15.8
(-3) 		22.2
(-2.4) 		79.6
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 24.7
(-2.7)
A 		12.7
(-3)
A 		42.9
(-2.2)
A 		65.1
(-1.6)
A 		179.8
(1.5)
A 		233.3
(3)
P 		221
B 14.2
(-2.7)
A 		50.8
(-1.4)
A 		6.9
(-3)
A 		80.4
(-0.3)
A 		159
(2.5)
P 		172.6
(3)
P 		166
C 43.4
(-2.9)
A 		49.8
(-2.8)
A 		41.6
(-3)
A 		81.5
(-1.8)
A 		166.5
(0.7)
P 		242.4
(3)
P 		201
avr 27.4
(-3) 		37.8
(-2.7) 		30.5
(-2.9) 		75.7
(-1.5) 		168.4
(1.5) 		216.1
(3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.4
(0.2)
A 		2.1
(-2.7)
A 		1.6
(-3)
A 		12.4
(3)
A 		11
B 19.7
(3)
A 		4.4
(-2.6)
A 		3.2
(-3)
A 		15.9
(1.6)
A 		17
C 11.9
(0.5)
A 		5.8
(-3)
A 		16.3
(3)
A 		13.5
(1.4)
A 		11
avr 13
(2.4) 		4.1
(-3) 		7
(-1.2) 		13.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 4.6
(-3)
A 		4.5
(-3)
A 		9.3
(-2.4)
A 		16.5
(-1.6)
A 		54.3
(2.7)
A 		56.8
(3)
P 		52
B 4.9
(-2.7)
A 		16.9
(-1.6)
A 		1.7
(-3)
A 		21.3
(-1.1)
A 		64.6
(3)
P 		64.4
(3)
P 		63
C 16.1
(-2.5)
A 		15.2
(-2.6)
A 		10.6
(-3)
A 		16.4
(-2.5)
A 		53.9
(0.7)
P 		81.1
(3)
P 		71
avr 8.5
(-2.9) 		12.2
(-2.5) 		7.2
(-3) 		18.1
(-1.9) 		57.6
(2) 		67.4
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178852_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.779
Sequence Type Exemplar sequence
Representative Public ID D1081.9 NCBI
Target Description D1081.9 /REP_DB=WormBase Gene ID /WP=CE23619 /TR=Q9U3L0 /GB=CAB54207.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059900 NCBI Caenorhabditis elegans D1081.9 (D1081.9) mRNA, complete cds. 11/11 None
GENEFINDER00000043204 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8494126:8495168:-1 11/11 None
SNAP00000043201 ENSEMBL cdna:SNAP chromosome:CEL140:I:8494251:8495168:-1 10/11 None
D1081.9 ENSEMBL cdna:known chromosome:CEL140:I:8494001:8495168:-1 gene:D1081.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8494056-8495099(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1081.9
Entrez Gene 172637 Entrez gene
SwissProt Q9U3L0 EMBL-EBI
WormBase CE23619 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54207 Hypothetical protein D1081.9 [Caenorhabditis elegans] ref|NP_492301.1| D1081.9 [Caenorhabditis elegans] 1.0E-137
blast CAB54207 Hypothetical protein D1081.9 [Caenorhabditis elegans] ref|NP_492301.1| D1081.9 [Caenorhabditis elegans] 1.0E-120
blast CAE67120 Hypothetical protein CBG12534 [Caenorhabditis briggsae] 9.0E-81
blast CAE67120 Hypothetical protein CBG12534 [Caenorhabditis briggsae] 3.0E-69
blast AAK73876 Hypothetical protein F55A12.10 [Caenorhabditis elegans] ref|NP_491578.1| F55A12.10 [Caenorhabditis elegans] 6.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178852_S_AT
ttaactcgcagtgctacttgtgtaaaaaaccgctaaaggtggatgaaatcaataaaaact
tgcgacctgatttgatggaattgttcaaagatccgcgacagctggcgtcagacctggtca
acgagctgaaacaagttgtcgcatttcaggcgaaacagcgagaaatatatgtaaaatgta
aaaacgccgaggcgaaaaaagataccgagcgattcgccgaagcacgctcaaaacacgtgg
aaaagactcaagaaatcgaaaaacgaaagaaagctttccttgaagataatgtcaaactga
aaaatgcaaaagaggaaaagaatcagctgatggccaggctgaaggaactacgcgaacaac
catctcaaaatctttctgtaaataaacgccgatcgaacactcgaactgagccgcctttct
cgaagatatcccgaactggtcctccctctgtgatgcgaaaagctagtcatgaattttcat
taaacctgcgtgatcagtcaacgtccaagattctcaccagcactcctctctccaatatcg
attatagtcgccgtgatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAACTCGCAGTGCTACTTGTGTAA 577 683 119 Antisense
TCAAAGATCCGCGACAGCTGGCGTC 364 629 203 Antisense
GCTGGCGTCAGACCTGGTCAACGAG 294 293 219 Antisense
GATACCGAGCGATTCGCCGAAGCAC 190 425 319 Antisense
AAGGAACTACGCGAACAACCATCTC 648 159 460 Antisense
GATCGAACACTCGAACTGAGCCGCC 52 417 509 Antisense
CCGCCTTTCTCGAAGATATCCCGAA 222 263 529 Antisense
CCTCCCTCTGTGATGCGAAAAGCTA 238 267 559 Antisense
AAACCTGCGTGATCAGTCAACGTCC 672 125 600 Antisense
TCAGTCAACGTCCAAGATTCTCACC 353 623 612 Antisense
ATCGATTATAGTCGCCGTGATCATA 233 35 655 Antisense
Sequence Source Affymetrix Proprietary Database