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[178850_at]

Description F47G4.8 /REP_DB=WormBase Gene ID /WP=CE18706 /TR=Q9XTS2 /GB=CAB16312.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 18.1
(-1)
A 		9.1
(-3)
A 		35.5
(3)
A 		15.6
(-1.5)
A 		26
B 15.6
(-0.9)
A 		40.1
(3)
A 		2.1
(-3)
A 		28.7
(1.2)
A 		38
C 26.9
(-1.6)
A 		37
(1.4)
A 		22.1
(-3)
A 		42.3
(3)
A 		20
avr 20.2
(-2.8) 		28.7
(2.9) 		19.9
(-3) 		28.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 11.3
(-1.3)
A 		9.3
(-1.8)
A 		5
(-3)
A 		27.3
(3)
A 		24
(2.1)
A 		14.6
(-0.4)
A 		22
B 28.4
(0.8)
A 		41.4
(3)
A 		34.9
(1.9)
A 		31.3
(1.3)
A 		6.1
(-3)
A 		19.4
(-0.7)
A 		35
C 11.9
(-1.6)
A 		46.1
(3)
A 		22
(-0.2)
A 		21.7
(-0.3)
A 		15.9
(-1.1)
A 		1.6
(-3)
A 		45
avr 17.2
(-1.4) 		32.3
(3) 		20.6
(-0.4) 		26.8
(1.4) 		15.3
(-2) 		11.9
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.6
(0.8)
A 		2
(-3)
A 		9.3
(3)
A 		2.3
(-2.8)
A 		7
B 5
(-0.1)
A 		9.9
(3)
A 		0.5
(-3)
A 		6.1
(0.6)
A 		9
C 8.9
(0.1)
A 		10.6
(3)
A 		7.7
(-2)
A 		7.1
(-3)
A 		4
avr 6.8
(1.2) 		7.5
(3) 		5.8
(-1.4) 		5.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.1
(-2)
A 		3.3
(-0.9)
A 		1.1
(-3)
A 		6.9
(2.6)
A 		7.3
(3)
A 		3.6
(-0.6)
A 		6
B 9.9
(0.9)
A 		13.8
(3)
A 		8.5
(0.2)
A 		8.3
(0.1)
A 		2.5
(-3)
A 		7.2
(-0.5)
A 		11
C 4.4
(-1.3)
A 		14.1
(3)
A 		5.6
(-0.8)
A 		4.4
(-1.3)
A 		5.2
(-0.9)
A 		0.5
(-3)
A 		14
avr 5.5
(-1.5) 		10.4
(3) 		5.1
(-1.8) 		6.5
(-0.5) 		5
(-1.9) 		3.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1885
Sequence Type Exemplar sequence
Representative Public ID F47G4.8 NCBI
Target Description F47G4.8 /REP_DB=WormBase Gene ID /WP=CE18706 /TR=Q9XTS2 /GB=CAB16312.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061048(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061048 NCBI Caenorhabditis elegans F47G4.8 (F47G4.8) mRNA, complete cds. 11/11 None
F47G4.8 ENSEMBL cdna:known chromosome:CEL140:I:14060238:14062272:-1 gene:F47G4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012302 8/11 Cross Hyb Matching Probes None
SNAP00000012289 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14060168-14062203(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G4.8
Entrez Gene 185947 Entrez gene
SwissProt Q9XTS2 EMBL-EBI
WormBase CE18706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16312 Hypothetical protein F47G4.8 [Caenorhabditis elegans] ref|NP_493449.1| F47G4.8 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493449.1 2 9-31,51-70
F47G4.8 2 9-31,51-70
Sequence
Target Sequence 
>C. ELEGANS:178850_AT
atggtcaacctggtacctacagtacctacagtaatcccgacgtttcctttggaaagagtg
cgtggactattgctacggtttggatacttgcatgctttcacctgttattctactttaggg
cccaccttgcaatacaacctataacaaccctacttggaaattcaattgctccaagcccac
gtgcccgactaacttcacaatgttctccaggcctcgggggctttggtgtttacaggccct
gtacttctcggaccctaccttatcggcaaatcttgggggctataaatggcgcccgaacac
tccggatgggaacccgtggcctgcttactcggtggtcttacaattcacgaaagaaggcaa
tatttggatggatgatggggccgcaggtaacggattttatccaaacacagcgtgctggaa
ggcctatgtttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTCAACCTGGTACCTACAGTAC 431 51 107 Antisense
GAGTGCGTGGACTATTGCTACGGTT 390 401 162 Antisense
TTGGATACTTGCATGCTTTCACCTG 430 709 186 Antisense
GCTTTCACCTGTTATTCTACTTTAG 699 303 200 Antisense
TTTAGGGCCCACCTTGCAATACAAC 441 665 220 Antisense
GCCCGACTAACTTCACAATGTTCTC 618 285 289 Antisense
GGCTTTGGTGTTTACAGGCCCTGTA 612 535 325 Antisense
ACCCTACCTTATCGGCAAATCTTGG 703 87 358 Antisense
CTGCTTACTCGGTGGTCTTACAATT 70 237 427 Antisense
GATGGATGATGGGGCCGCAGGTAAC 370 407 473 Antisense
GCGTGCTGGAAGGCCTATGTTTGCG 117 293 516 Antisense
Sequence Source Affymetrix Proprietary Database