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[178849_at] 7TM chemoreceptor, srw family

Description C25F9.1 /REP_DB=WormBase Gene ID /WP=CE17466 /TR=O62077 /GB=CAB03921.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 71      6grp_total > 31      4grp_total > 38      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 432.8
(3)
P 		216.3
(-0.9)
P 		99.1
(-3)
P 		195.8
(-1.3)
P 		334
B 414.7
(3)
P 		188.8
(-2.1)
P 		146.4
(-3)
P 		213.9
(-1.5)
P 		268
C 448.4
(3)
P 		165.4
(-2.5)
P 		138.7
(-3)
P 		254.1
(-0.8)
P 		310
avr 432
(3) 		190.2
(-1.8) 		128.1
(-3) 		221.3
(-1.2) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 233.4
(-1.4)
P 		486.5
(3)
P 		426.4
(2)
P 		373.5
(1.1)
P 		253.7
(-1)
P 		138.5
(-3)
P 		348
B 349.7
(-0)
P 		502.3
(2)
P 		577
(3)
P 		367
(0.2)
P 		244.6
(-1.5)
P 		129
(-3)
P 		448
C 339.8
(1.2)
P 		426.4
(3)
P 		343.2
(1.3)
P 		366.8
(1.8)
P 		183.7
(-2.1)
P 		138.4
(-3)
P 		288
avr 307.6
(0.1) 		471.7
(3) 		448.9
(2.6) 		369.1
(1.2) 		227.3
(-1.4) 		135.3
(-3) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 157.6
(3)
P 		46.9
(-2)
P 		25.9
(-3)
P 		28.7
(-2.9)
P 		132
B 132.3
(3)
P 		46.6
(-2.2)
P 		33.9
(-3)
P 		45.6
(-2.3)
P 		98
C 148.4
(3)
P 		47.6
(-2.7)
P 		48.3
(-2.7)
P 		42.8
(-3)
P 		106
avr 146.1
(3) 		47
(-2.4) 		36
(-3) 		39
(-2.8) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 43
(-2.6)
P 		173
(3)
P 		92.9
(-0.5)
P 		94.7
(-0.4)
P 		76.5
(-1.2)
P 		33.7
(-3)
P 		139
B 121.7
(0.7)
P 		167.2
(3)
P 		140.1
(1.6)
P 		97.2
(-0.5)
P 		99.4
(-0.4)
P 		48.1
(-3)
P 		119
C 125.9
(2.7)
P 		130.1
(3)
P 		87.3
(-0.1)
P 		73.8
(-1)
P 		59.4
(-2.1)
P 		46.3
(-3)
P 		84
avr 96.9
(-0.1) 		156.8
(3) 		106.8
(0.4) 		88.6
(-0.6) 		78.4
(-1.1) 		42.7
(-3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14139
Sequence Type Exemplar sequence
Representative Public ID C25F9.1 NCBI
Target Description C25F9.1 /REP_DB=WormBase Gene ID /WP=CE17466 /TR=O62077 /GB=CAB03921.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075380 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-85) (srw-85) mRNA, complete cds. 11/11 None
GENEFINDER00000028328 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19432070:19434591:-1 11/11 None
C25F9.1 ENSEMBL cdna:known chromosome:CEL140:V:19431960:19434260:-1 gene:C25F9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028319 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19432264-19434260(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-85
Ensembl C25F9.1
Entrez Gene 182903 Entrez gene
SwissProt O62077 EMBL-EBI
WormBase CE31883 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03921 Hypothetical protein C25F9.1 [Caenorhabditis elegans] ref|NP_507781.2| Serpentine Receptor, class W family member (srw-85) [Caenorhabditis elegans] 0.0
blast CAB03920 Hypothetical protein C25F9.7 [Caenorhabditis elegans] ref|NP_507775.1| Serpentine Receptor, class W family member (srw-86) [Caenorhabditis elegans] 6.0E-97
blast CAB03920 Hypothetical protein C25F9.7 [Caenorhabditis elegans] ref|NP_507775.1| Serpentine Receptor, class W family member (srw-86) [Caenorhabditis elegans] 4.0E-50
blast CAA21642 Hypothetical protein Y43F8A.4 [Caenorhabditis elegans] ref|NP_507772.1| Serpentine Receptor, class W family member (srw-84) [Caenorhabditis elegans] 5.0E-43
blast CAB03918 Hypothetical protein C25F9.2 [Caenorhabditis elegans] ref|NP_507780.1| C25F9.2 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507781.2 4 15-37,50-69,110-132,145-167
C25F9.1 4 15-37,50-69,110-132,145-167
GENEFINDER00000028328 2 82-101,116-133
Sequence
Target Sequence 
>C. ELEGANS:178849_AT
cccgccaattcaacgtttcctggctttggaactattcaaactgacttctacaaggatttt
cctgaaattttcgatatatttacactttttgacggtatcaaaaatctagacgaagtgtgg
tggcgcgaccttgtcgccctacccgccctgtatcacaagcctaactttggcgtgtcccga
aataaagtcgttggctttagtcattgtttgcctaaagccttggtcctcgggaagctggaa
agtgatatcaagttttcgacgtgtttggttgagaaaagtgaattgaagaaaaagatagac
cgtttactgcattcgagacttgaagatcggctcaattggcaaatgatgctagcgcagaat
cttttgagagacgcagggctagatgaacttaaaacagaatatgaagtggaggaccttgtc
aaaatagctgatcatttagctaactaccagattgttgtttggactatagatggagatggt
cgatacgtagatttcgcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGCCAATTCAACGTTTCCTGGCT 113 261 556 Antisense
ACTGACTTCTACAAGGATTTTCCTG 225 97 595 Antisense
AGACGAAGTGTGGTGGCGCGACCTT 405 71 663 Antisense
CAAGCCTAACTTTGGCGTGTCCCGA 557 183 711 Antisense
AGTCGTTGGCTTTAGTCATTGTTTG 367 59 741 Antisense
ATTGTTTGCCTAAAGCCTTGGTCCT 527 1 758 Antisense
GTGATATCAAGTTTTCGACGTGTTT 343 483 797 Antisense
GACCGTTTACTGCATTCGAGACTTG 326 381 853 Antisense
GATGCTAGCGCAGAATCTTTTGAGA 293 413 900 Antisense
GAGACGCAGGGCTAGATGAACTTAA 167 395 923 Antisense
GGTCGATACGTAGATTTCGCAATCA 226 503 1033 Antisense
Sequence Source Affymetrix Proprietary Database