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[178848_at]

Description F32A7.7 /REP_DB=WormBase Gene ID /WP=CE15940 /TR=P91860 /GB=CAB05504.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 26      6grp_cgc > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 76.7
(-3)
A 		85.9
(-2.3)
A 		78.9
(-2.8)
A 		151.3
(3)
P 		75
B 58
(-3)
A 		110.9
(-0.5)
P 		86.4
(-1.6)
M 		183.5
(3)
P 		126
C 74.6
(-3)
P 		186.4
(2.6)
A 		79.8
(-2.7)
A 		194.6
(3)
P 		120
avr 69.8
(-3) 		127.7
(0.3) 		81.7
(-2.3) 		176.5
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 83.7
(3)
A 		28.4
(-3)
A 		74.3
(2)
P 		39.1
(-1.8)
A 		66.4
(1.1)
A 		62.5
(0.7)
A 		55
B 54.6
(-1.2)
A 		56.6
(-0.3)
A 		50.7
(-3)
A 		60.3
(1.4)
A 		63.8
(3)
A 		63.5
(2.9)
P 		13
C 51.4
(-0.5)
A 		74.6
(3)
A 		58.4
(0.5)
A 		45.7
(-1.4)
A 		35.1
(-3)
A 		46.7
(-1.2)
P 		40
avr 63.2
(3) 		53.2
(-1.1) 		61.1
(2.1) 		48.4
(-3) 		55.1
(-0.3) 		57.6
(0.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 27.9
(3)
A 		18.7
(-3)
A 		20.6
(-1.8)
A 		22.1
(-0.8)
P 		9
B 18.5
(-3)
A 		27.4
(-0.4)
P 		20
(-2.6)
M 		39.1
(3)
P 		21
C 24.7
(-3)
P 		53.6
(3)
A 		27.8
(-2.4)
A 		32.8
(-1.3)
P 		29
avr 23.7
(-2.5) 		33.2
(3) 		22.8
(-3) 		31.3
(1.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 15.4
(0.3)
A 		10.1
(-2.9)
A 		16.2
(0.7)
P 		9.9
(-3)
A 		20
(3)
A 		15.2
(0.1)
A 		10
B 19
(-0)
A 		18.8
(-0.1)
A 		12.3
(-3)
A 		16
(-1.4)
A 		25.9
(3)
A 		23.7
(2)
P 		14
C 19.1
(1.4)
A 		22.8
(3)
A 		14.9
(-0.5)
A 		9.2
(-3)
A 		11.4
(-2)
A 		15.6
(-0.2)
P 		14
avr 17.8
(1.9) 		17.2
(1.5) 		14.5
(-0.7) 		11.7
(-3) 		19.1
(3) 		18.2
(2.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1724
Sequence Type Exemplar sequence
Representative Public ID F32A7.7 NCBI
Target Description F32A7.7 /REP_DB=WormBase Gene ID /WP=CE15940 /TR=P91860 /GB=CAB05504.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061194 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-245) (str-245) mRNA, complete cds. 11/11 None
SNAP00000011759 ENSEMBL cdna:SNAP chromosome:CEL140:I:14859182:14862725:1 11/11 None
F32A7.7 ENSEMBL cdna:known chromosome:CEL140:I:14860936:14862725:1 gene:F32A7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14860866-14862656(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-245
Ensembl F32A7.7
Entrez Gene 185187 Entrez gene
SwissProt P91860 EMBL-EBI
WormBase CE15940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05504 Hypothetical protein F32A7.7 [Caenorhabditis elegans] ref|NP_493595.1| Seven TM Receptor family member (str-245) [Caenorhabditis elegans] 0.0
blast CAB05504 Hypothetical protein F32A7.7 [Caenorhabditis elegans] ref|NP_493595.1| Seven TM Receptor family member (str-245) [Caenorhabditis elegans] 1.0E-146
blast CAE72535 Hypothetical protein CBG19715 [Caenorhabditis briggsae] 2.0E-98
blast CAE72535 Hypothetical protein CBG19715 [Caenorhabditis briggsae] 7.0E-78
blast CAE66196 Hypothetical protein CBG11436 [Caenorhabditis briggsae] 2.0E-56
blast CAB01122 Hypothetical protein C06B3.9 [Caenorhabditis elegans] ref|NP_506453.1| Seven TM Receptor family member (str-252) [Caenorhabditis elegans] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.6E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493595.1 7 5-27,40-62,88-110,129-151,200-222,250-272,282-304
F32A7.7 7 5-27,40-62,88-110,129-151,200-222,250-272,282-304
SNAP00000011759 5 51-73,92-114,163-185,213-235,245-267
Sequence
Target Sequence 
>C. ELEGANS:178848_AT
atgagcccatttccggaagctgatcaaatattgagtgaaaatttcgctttgcccaacggt
ttgagtatagagcaagtagcatatgttggattcatattttacatctctgacgaaaccagc
aacaacctacgcgtacattgggagtctgtgattggaattggaattcaatgtgttttcata
agcatttcattttgcctaatattcatatttgggttcaagtgctaccgacaaactcgcaaa
ttcgtatcgtctcaatcaacaaacgcaatcaaccttaactcacagttattcaatgctctg
gttctacaaacaataattccaatatgtttgatgcattttccagctaccattgtatatatg
gcagcaggtttgaacaagtcaaatgagatctttggacaactactgtccctttttatttgt
ctttatccggttttggatccactgccaaactttttcataataaaaagttatcagaaagtt
gtgaaagatttctactcgaaaattcttcgaagacagccacccagtactattgtgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCCCATTTCCGGAAGCTGATC 625 45 463 Antisense
GAGTGAAAATTTCGCTTTGCCCAAC 65 399 495 Antisense
AACCTACGCGTACATTGGGAGTCTG 379 145 586 Antisense
GTTCAAGTGCTACCGACAAACTCGC 475 445 675 Antisense
ACTCGCAAATTCGTATCGTCTCAAT 475 99 694 Antisense
AACGCAATCAACCTTAACTCACAGT 30 145 724 Antisense
GTTATTCAATGCTCTGGTTCTACAA 531 447 747 Antisense
GTTTGATGCATTTTCCAGCTACCAT 498 451 788 Antisense
GACAACTACTGTCCCTTTTTATTTG 560 365 857 Antisense
ATCCACTGCCAAACTTTTTCATAAT 105 41 899 Antisense
GACAGCCACCCAGTACTATTGTGCG 409 367 974 Antisense
Sequence Source Affymetrix Proprietary Database