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[178847_at]

Description C30F2.3 /REP_DB=WormBase Gene ID /WP=CE05341 /TR=Q18329 /GB=CAA94579.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 661
1 2 3 4 range
A 708.5
(3)
P 		294.4
(-0.8)
P 		344
(-0.3)
P 		47.1
(-3)
A 		661
B 533.2
(2)
P 		628
(3)
P 		304.9
(-0.5)
P 		81.3
(-3)
A 		547
C 660.4
(3)
P 		658.6
(3)
P 		361.8
(-0.2)
P 		105.6
(-3)
A 		555
avr 634
(3) 		527
(1.8) 		336.9
(-0.2) 		78
(-3) 		556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 439
1 2 3 4 5 6 range
A 306.1
(-0.3)
P 		481.2
(3)
P 		276.2
(-0.9)
P 		191.7
(-2.5)
P 		206
(-2.2)
P 		165.6
(-3)
P 		316
B 418.5
(3)
P 		380.6
(2.2)
P 		206.1
(-1.3)
P 		219.3
(-1)
P 		223.2
(-0.9)
P 		119.9
(-3)
P 		299
C 558.9
(3)
P 		383.9
(0.4)
P 		312.9
(-0.6)
P 		200.8
(-2.2)
P 		280.2
(-1.1)
P 		148.8
(-3)
P 		410
avr 427.8
(3) 		415.2
(2.7) 		265.1
(-0.4) 		203.9
(-1.7) 		236.5
(-1.1) 		144.8
(-3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 257.9
(3)
P 		63.9
(-1.6)
P 		89.9
(-1)
P 		6.9
(-3)
A 		251
B 170
(3)
P 		155.1
(2.4)
P 		70.7
(-0.9)
P 		17.3
(-3)
A 		153
C 218.6
(3)
P 		189.4
(2.1)
P 		126.1
(0.2)
P 		17.8
(-3)
A 		201
avr 215.5
(3) 		136.1
(0.6) 		95.6
(-0.6) 		14
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 56.4
(-2.3)
P 		171.1
(3)
P 		60.1
(-2.1)
P 		48.6
(-2.6)
P 		62.2
(-2)
P 		40.3
(-3)
P 		131
B 145.6
(3)
P 		126.7
(1.9)
P 		50
(-2.7)
P 		58.1
(-2.2)
P 		90.7
(-0.3)
P 		44.7
(-3)
P 		101
C 207.2
(3)
P 		117.1
(-0.2)
P 		79.6
(-1.6)
P 		40.4
(-3)
P 		90.7
(-1.2)
P 		49.8
(-2.7)
P 		167
avr 136.4
(2.9) 		138.3
(3) 		63.2
(-1.8) 		49
(-2.7) 		81.2
(-0.7) 		44.9
(-3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17976
Sequence Type Exemplar sequence
Representative Public ID C30F2.3 NCBI
Target Description C30F2.3 /REP_DB=WormBase Gene ID /WP=CE05341 /TR=Q18329 /GB=CAA94579.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078231(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078231 NCBI Caenorhabditis elegans C30F2.3 (C30F2.3) mRNA, complete cds. 9/11 None
SNAP00000029823 ENSEMBL cdna:SNAP chromosome:CEL140:X:16082367:16085587:1 11/11 None
GENEFINDER00000029827 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16082367:16086206:1 11/11 None
C30F2.3 ENSEMBL cdna:known chromosome:CEL140:X:16082367:16085641:1 gene:C30F2.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16083222-16085587(+) 95.6 98.43
Public Domain and Genome References
Gene Title
Ensembl C30F2.3
Entrez Gene 181686 Entrez gene
SwissProt Q18329 EMBL-EBI
WormBase CE35416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94579 Hypothetical protein C30F2.3 [Caenorhabditis elegans] ref|NP_510632.2| C30F2.3 [Caenorhabditis elegans] 0.0
blast CAE69996 Hypothetical protein CBG16402 [Caenorhabditis briggsae] 1.0E-161
blast CAE69996 Hypothetical protein CBG16402 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:178847_AT
gtgagtgcttctgacctcaagaccactcgtcttcgtgatcaaccaccaccagccaacttg
aaccttcgtggaaccggaccactcccaggaccaatgctcaccagcgccaatgcgaattct
cagttgttccgtgatgctggaagtaatgatatctactatggaaatgctaataccaacaac
tacaacaataacaataactacaataacaatggccagcaaacctacaggttctcttcaaga
ttttttgatgttgctggaaataacactgaaatgtattacccttatcgcacttctaccaat
tggcaaaacaaccaactaggagtatcaaactcaggagctcctgggtccggtgttcagttc
gatcaatccttatcctctacaacaatgagtccgaccgcaagatgcgccctttccgatccc
tactggtgccaagaatatgtgcaaatctatttgagttcccgccaacaatatcagggaata
tcgactcaacaatcctgcccatctctgatcgcttctctgactgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGTGCTTCTGACCTCAAGACCA 423 483 709 Antisense
CACCAGCCAACTTGAACCTTCGTGG 680 197 755 Antisense
TGCTCACCAGCGCCAATGCGAATTC 656 579 803 Antisense
ATGCGAATTCTCAGTTGTTCCGTGA 596 39 818 Antisense
GAAATGTATTACCCTTATCGCACTT 600 361 976 Antisense
TTATCGCACTTCTACCAATTGGCAA 262 681 990 Antisense
AAACTCAGGAGCTCCTGGGTCCGGT 31 115 1035 Antisense
TCCGGTGTTCAGTTCGATCAATCCT 212 595 1054 Antisense
TCAATCCTTATCCTCTACAACAATG 583 633 1071 Antisense
GCAAATCTATTTGAGTTCCCGCCAA 644 317 1149 Antisense
TCTCTGATCGCTTCTCTGACTGAGA 63 613 1210 Antisense
Sequence Source Affymetrix Proprietary Database