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[178844_at]

Description D1081.3 /REP_DB=WormBase Gene ID /WP=CE05535 /TR=Q18956 /GB=CAB00024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 08      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 39.4
(-2)
A
16.3
(-3)
A
59.2
(-1.1)
A
150.1
(3)
A
134
B 33.7
(-3)
A
57.8
(0.4)
A
64.4
(1.4)
A
75.7
(3)
P
42
C 9.3
(-3)
A
37
(-1.5)
A
41.1
(-1.3)
A
118.9
(3)
A
110
avr 27.5
(-3)
37
(-2.3)
54.9
(-1.1)
114.9
(3)
87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 75.4
(2.4)
A
67.9
(1.8)
A
45.2
(-0.1)
A
10.7
(-3)
A
82
(3)
A
76.1
(2.5)
A
71
B 7.4
(-3)
A
50
(0.8)
A
49.1
(0.8)
M
74.1
(3)
A
66.8
(2.3)
P
61.5
(1.9)
P
67
C 38.5
(-3)
A
54.7
(-1.1)
A
88.6
(3)
A
52.3
(-1.3)
A
49.5
(-1.7)
A
67.6
(0.5)
A
50
avr 40.4
(-3)
57.5
(0.7)
61
(1.4)
45.7
(-1.9)
66.1
(2.5)
68.4
(3)
28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.3
(0.5)
A
3.5
(-3)
A
15.5
(0.9)
A
22
(3)
A
19
B 10.8
(-3)
A
14.3
(1)
A
14.9
(1.6)
A
16.1
(3)
P
5
C 3.1
(-3)
A
10.6
(-0.3)
A
14.3
(1)
A
20
(3)
A
17
avr 9.4
(-3)
9.5
(-2.9)
14.9
(0.3)
19.4
(3)
10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 13.9
(0.1)
A
24.1
(2.8)
A
9.8
(-1.1)
A
2.7
(-3)
A
24.7
(3)
A
18.5
(1.3)
A
22
B 2.6
(-3)
A
16.6
(0.4)
A
11.9
(-0.7)
M
19.6
(1.1)
A
27.2
(3)
P
22.9
(2)
P
25
C 14.3
(-1.1)
A
16.7
(0.1)
A
22.6
(3)
A
10.5
(-3)
A
16
(-0.3)
A
22.6
(3)
A
12
avr 10.3
(-3)
19.1
(1.3)
14.8
(-0.8)
10.9
(-2.7)
22.6
(3)
21.3
(2.4)
12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.355
Sequence Type Exemplar sequence
Representative Public ID D1081.3 NCBI
Target Description D1081.3 /REP_DB=WormBase Gene ID /WP=CE05535 /TR=Q18956 /GB=CAB00024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059896(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_059896 NCBI Caenorhabditis elegans D1081.3 (D1081.3) mRNA, complete cds. 11/11 None
SNAP00000043191 ENSEMBL cdna:SNAP chromosome:CEL140:I:8471481:8472655:-1 9/11 None
GENEFINDER00000043209 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8471481:8479977:-1 11/11 None
D1081.3 ENSEMBL cdna:known chromosome:CEL140:I:8471481:8479977:-1 gene:D1081.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043193 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8471411-8479908(-) 97.08 100.0
Public Domain and Genome References
Gene Title
Ensembl D1081.3
Entrez Gene 183927 Entrez gene
SwissProt Q18956 EMBL-EBI
WormBase CE05535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00024 Hypothetical protein D1081.3 [Caenorhabditis elegans] ref|NP_492297.1| D1081.3 [Caenorhabditis elegans] 0.0
blast CAB00024 Hypothetical protein D1081.3 [Caenorhabditis elegans] ref|NP_492297.1| D1081.3 [Caenorhabditis elegans] 4.0E-80
blast CAE67123 Hypothetical protein CBG12539 [Caenorhabditis briggsae] 9.0E-62
blast CAE67123 Hypothetical protein CBG12539 [Caenorhabditis briggsae] 1.0E-42
blast CAB04116 Hypothetical protein F15H9.1 [Caenorhabditis elegans] ref|NP_493073.1| F15H9.1 [Caenorhabditis elegans] 3.0E-16
blast CAB04116 Hypothetical protein F15H9.1 [Caenorhabditis elegans] ref|NP_493073.1| F15H9.1 [Caenorhabditis elegans] 6.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 1.3E-13
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 1.3E-86
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 1.5E-54
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 1.3E-86
Sequence
Target Sequence
>C. ELEGANS:178844_AT
gatcgagggggacctttggtgaagttgtatgatgataaagttacggctattgggatcaag
tccactactggatacaattcaaatcaatatgaatattactttgatttgagaaagtataac
aatgaaatctgtgaattctctggagtttgtacaaaaggcccagttggtagaccatcgtcc
gaagcttcatcttcaagtaaccagccggaggctactacacaacaaattgtacaaaacagc
tccgatcccaattccccgaatgttaatactaatcctagtaagaacaggaatacaacttcc
aactccaactacattgaacttccaatcgacgaaggaaaaattgatgaagtgaatgaagct
ctctcatatccagaggattccaatgattattttttgaagagtatgatggctaaaaatacg
gaaagaacagtctacaaagcaatgtttgaccaatttgatagtcctgaacaggatgcaaga
ggttctgtcatcaacgaga


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GATCGAGGGGGACCTTTGGTGAAGT 705 411 1627 Antisense
GGCTATTGGGATCAAGTCCACTACT 411 537 1671 Antisense
GAAATCTGTGAATTCTCTGGAGTTT 310 363 1750 Antisense
GTTGGTAGACCATCGTCCGAAGCTT 431 435 1789 Antisense
TCATCTTCAAGTAACCAGCCGGAGG 636 619 1813 Antisense
AGCCGGAGGCTACTACACAACAAAT 642 83 1829 Antisense
TTGTACAAAACAGCTCCGATCCCAA 661 707 1853 Antisense
CGATCCCAATTCCCCGAATGTTAAT 73 247 1869 Antisense
CAACTTCCAACTCCAACTACATTGA 187 189 1919 Antisense
GAAGCTCTCTCATATCCAGAGGATT 165 343 1981 Antisense
GCAAGAGGTTCTGTCATCAACGAGA 447 321 2101 Antisense
Sequence Source Affymetrix Proprietary Database