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[178843_at]

Description F08G5.6 /REP_DB=WormBase Gene ID /WP=CE05576 /TR=Q19223 /GB=CAA94586.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_high_8_8 > 51      6grp_highest_nonorm > 33      6grp_total > 41      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11844
1 2 3 4 range
A 11928.6
(3)
P 		11392.9
(2.7)
P 		10154
(2.1)
P 		108.6
(-3)
P 		11820
B 11441.4
(2.9)
P 		11650.9
(3)
P 		10604.2
(2.5)
P 		84.8
(-3)
A 		11566
C 11673.9
(3)
P 		10221.1
(2.2)
P 		9334.3
(1.8)
P 		112.5
(-3)
P 		11561
avr 11681.3
(3) 		11088.3
(2.7) 		10030.8
(2.1) 		102
(-3) 		11579

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2432
1 2 3 4 5 6 range
A 1572
(0.2)
P 		1444.9
(-0.1)
P 		2719.2
(3)
P 		1695.2
(0.5)
P 		523.1
(-2.4)
P 		287.6
(-3)
P 		2432
B 1311.7
(0.2)
P 		1562.4
(1)
P 		2187.8
(3)
P 		1606.1
(1.1)
P 		542.7
(-2.3)
P 		334.5
(-3)
P 		1853
C 1213.7
(-0.6)
P 		1464.1
(0.1)
P 		2509.1
(3)
P 		1718.6
(0.8)
P 		518.1
(-2.5)
P 		331.6
(-3)
P 		2178
avr 1365.8
(-0.1) 		1490.5
(0.3) 		2472
(3) 		1673.3
(0.8) 		528
(-2.4) 		317.9
(-3) 		2154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4327
1 2 3 4 range
A 4343.2
(3)
P 		2473.1
(0.4)
P 		2654.5
(0.7)
P 		15.9
(-3)
P 		4327
B 3648.6
(3)
P 		2877.5
(1.7)
P 		2457.2
(1)
P 		18.1
(-3)
A 		3631
C 3864.4
(3)
P 		2938.6
(1.6)
P 		3253.3
(2)
P 		19
(-3)
P 		3845
avr 3952.1
(3) 		2763.1
(1.2) 		2788.3
(1.2) 		17.7
(-3) 		3934

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 569
1 2 3 4 5 6 range
A 289.8
(-0.5)
P 		513.9
(2.1)
P 		592.2
(3)
P 		430
(1.1)
P 		157.8
(-2)
P 		70
(-3)
P 		522
B 456.4
(1.9)
P 		520.1
(2.8)
P 		531.3
(3)
P 		425.4
(1.4)
P 		220.5
(-1.6)
P 		124.7
(-3)
P 		407
C 449.9
(0.9)
P 		446.7
(0.8)
P 		638.6
(3)
P 		345.6
(-0.3)
P 		167.6
(-2.4)
P 		111
(-3)
P 		528
avr 398.7
(0.7) 		493.6
(1.8) 		587.4
(3) 		400.3
(0.7) 		182
(-2) 		101.9
(-3) 		486
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178843_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9157
Sequence Type Exemplar sequence
Representative Public ID F08G5.6 NCBI
Target Description F08G5.6 /REP_DB=WormBase Gene ID /WP=CE05576 /TR=Q19223 /GB=CAA94586.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069973 NCBI Caenorhabditis elegans F08G5.6 (F08G5.6) mRNA, complete cds. 11/11 None
SNAP00000043810 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12435822:12438161:1 11/11 None
GENEFINDER00000043821 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12435822:12438161:1 11/11 None
F08G5.6 ENSEMBL cdna:known chromosome:CEL140:IV:12435804:12438161:1 gene:F08G5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12435827-12438167(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G5.6
Entrez Gene 184206 Entrez gene
SwissProt Q19223 EMBL-EBI
WormBase CE05576 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94586 Hypothetical protein F08G5.6 [Caenorhabditis elegans] ref|NP_502374.1| F08G5.6 [Caenorhabditis elegans] 0.0
blast AAD34648 Hypothetical protein C17H12.8 [Caenorhabditis elegans] ref|NP_501048.1| C17H12.8 [Caenorhabditis elegans] 1.0E-107
blast CAE61747 Hypothetical protein CBG05701 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 3.7E-33
Sequence
Target Sequence 
>C. ELEGANS:178843_AT
aatattctcgcttgtacactttgcaagctgaaatcggctggagcccacgaaccattgtgg
caaaggagaggatgtccatttccatcgcatactccggctggacaccctatgacaatttgt
acaactttttcttgattgaaggagatttggagaacccattagcaatctaccgtatgactc
aatttttgtaccaaaactatatcagtaaaggaaacaaagttactgttcttggattggata
acacgttttcgagaagctcaattgtatttgtcccactgtcacaagctcaacaatatgatt
catatacagcggcaagtggctatatgaatctgaatcaagtggatattgatgcaactgtcg
gagaaaagaaaaagaaaattgtcacaatgatttcaatgcgagattatgttatgatttgga
aaatggaaaagacaagtaaccctgactgtgttctgaaagcaattacatctcctccaacaa
gtgaatcaaaagtgcttctcgatttctcggtcgaaacccaattcccgacaaacatcactc
gtccatcgttttgcattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATTCTCGCTTGTACACTTTGCA 69 175 449 Antisense
CTGGAGCCCACGAACCATTGTGGCA 705 239 486 Antisense
AGGATGTCCATTTCCATCGCATACT 117 55 517 Antisense
CGGCTGGACACCCTATGACAATTTG 624 241 543 Antisense
GGAGAACCCATTAGCAATCTACCGT 515 517 597 Antisense
GCTCAATTGTATTTGTCCCACTGTC 181 303 704 Antisense
GACAAGTAACCCTGACTGTGTTCTG 170 365 879 Antisense
TGAAAGCAATTACATCTCCTCCAAC 340 573 902 Antisense
AAAAGTGCTTCTCGATTTCTCGGTC 88 133 936 Antisense
CAATTCCCGACAAACATCACTCGTC 410 179 967 Antisense
TCACTCGTCCATCGTTTTGCATTAT 249 627 983 Antisense
Sequence Source Affymetrix Proprietary Database