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[178842_at] 7TM chemoreceptor, srw family

Description T10H4.5 /REP_DB=WormBase Gene ID /WP=CE16390 /TR=O45776 /GB=CAB03335.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 04      6grp_cgc > 64      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 38.1
(-1.1)
A 		21.3
(-3)
A 		27.2
(-2.3)
A 		74.4
(3)
A 		53
B 46.7
(1.5)
A 		14.6
(-3)
A 		32.2
(-0.5)
A 		57.6
(3)
A 		43
C 25.1
(-1.8)
A 		31.1
(-1.5)
A 		3.4
(-3)
A 		111.9
(3)
P 		109
avr 36.6
(-1.4) 		22.3
(-2.9) 		20.9
(-3) 		81.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 20.7
(-1.3)
A 		20.5
(-1.4)
A 		66.5
(3)
P 		18.2
(-1.6)
A 		29
(-0.6)
A 		3.3
(-3)
A 		63
B 4.8
(-3)
A 		41.4
(3)
A 		13.8
(-1.5)
A 		19.2
(-0.6)
A 		30.6
(1.2)
A 		12.2
(-1.8)
A 		37
C 16.3
(0.9)
A 		23.4
(3)
A 		14.3
(0.3)
A 		3.1
(-3)
A 		23.1
(2.9)
A 		21.7
(2.5)
A 		20
avr 13.9
(-2.5) 		28.4
(2) 		31.5
(3) 		13.5
(-2.7) 		27.6
(1.8) 		12.4
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.9
(3)
A 		4.6
(-3)
A 		7.1
(-1.4)
A 		10.9
(1.1)
A 		9
B 14.9
(3)
A 		3.6
(-3)
A 		7.5
(-0.9)
A 		12.3
(1.6)
A 		11
C 8.3
(-0.6)
A 		9
(-0.4)
A 		1.2
(-3)
A 		18.9
(3)
P 		18
avr 12.4
(1.9) 		5.7
(-2.7) 		5.3
(-3) 		14
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.8
(-1.7)
A 		7.3
(-0.2)
A 		14.5
(3)
P 		4.6
(-1.3)
A 		8.8
(0.5)
A 		0.8
(-3)
A 		14
B 1.7
(-3)
A 		13.8
(3)
A 		3.4
(-2.2)
A 		5.1
(-1.3)
A 		12.4
(2.3)
A 		4.5
(-1.6)
A 		12
C 6.1
(1.8)
A 		7.1
(2.7)
A 		3.7
(-0.3)
A 		0.6
(-3)
A 		7.5
(3)
A 		7.3
(2.8)
A 		7
avr 3.9
(-2.5) 		9.4
(2.8) 		7.2
(0.7) 		3.4
(-3) 		9.6
(3) 		4.2
(-2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178842_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13449
Sequence Type Exemplar sequence
Representative Public ID T10H4.5 NCBI
Target Description T10H4.5 /REP_DB=WormBase Gene ID /WP=CE16390 /TR=O45776 /GB=CAB03335.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074381 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-16) (srw-16) mRNA, complete cds. 11/11 None
GENEFINDER00000030488 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15275969:15277068:-1 11/11 None
T10H4.5 ENSEMBL cdna:known chromosome:CEL140:V:15275969:15277443:-1 gene:T10H4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030476 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15276008-15277443(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-16
Ensembl T10H4.5
Entrez Gene 188394 Entrez gene
SwissProt O45776 EMBL-EBI
WormBase CE33826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03335 Hypothetical protein T10H4.5 [Caenorhabditis elegans] ref|NP_506782.2| Serpentine Receptor, class W family member (srw-16) [Caenorhabditis elegans] 0.0
blast CAB03335 Hypothetical protein T10H4.5 [Caenorhabditis elegans] ref|NP_506782.2| Serpentine Receptor, class W family member (srw-16) [Caenorhabditis elegans] 1.0E-131
blast CAB03333 Hypothetical protein T10H4.6 [Caenorhabditis elegans] ref|NP_506783.1| Serpentine Receptor, class W family member (srw-17) [Caenorhabditis elegans] 1.0E-120
blast CAB03337 Hypothetical protein T10H4.8 [Caenorhabditis elegans] ref|NP_506785.2| Serpentine Receptor, class W family member (srw-19) [Caenorhabditis elegans] 1.0E-104
blast CAB03333 Hypothetical protein T10H4.6 [Caenorhabditis elegans] ref|NP_506783.1| Serpentine Receptor, class W family member (srw-17) [Caenorhabditis elegans] 6.0E-79
blast CAB03337 Hypothetical protein T10H4.8 [Caenorhabditis elegans] ref|NP_506785.2| Serpentine Receptor, class W family member (srw-19) [Caenorhabditis elegans] 2.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506782.2 6 37-56,66-88,131-153,163-180,230-252,276-298
T10H4.5 6 37-56,66-88,131-153,163-180,230-252,276-298
GENEFINDER00000030488 4 7-29,39-58,105-127,151-173
Sequence
Target Sequence 
>C. ELEGANS:178842_AT
tacaaagaacacctcaatcacacctactacgtattggtagtttctagagcaaaagacaga
aatatggataagtttaataaaatagatctcatctttcggttcgcttcagttattttatac
ccaactctaactatcactctacttttgcaattgagaacaatcaagaaaaaaagacagaat
atgaataaaaacgcgttgaatgaccaatcgtataaaacaaacaagatgattctcatgatg
actatatttttcatgacttccgagggtcttcctgtcattggatcatatattcttgaaaac
ttcatcttgtctaaactaatttacgaagagtcgatgactgatattgtatcactacttgga
ctttcacaatatgttttctggaatcttcgtacaatgaatggaatttctcatgctttcgta
tgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAAGAACACCTCAATCACACCT 211 643 613 Antisense
CAATCACACCTACTACGTATTGGTA 98 181 627 Antisense
AATAGATCTCATCTTTCGGTTCGCT 148 173 693 Antisense
GTTCGCTTCAGTTATTTTATACCCA 544 441 711 Antisense
TATACCCAACTCTAACTATCACTCT 421 659 728 Antisense
AACTATCACTCTACTTTTGCAATTG 3 141 741 Antisense
TTTCATGACTTCCGAGGGTCTTCCT 29 667 861 Antisense
GGGTCTTCCTGTCATTGGATCATAT 343 497 876 Antisense
GAAAACTTCATCTTGTCTAAACTAA 225 355 907 Antisense
GTATCACTACTTGGACTTTCACAAT 532 453 958 Antisense
GGAATTTCTCATGCTTTCGTATGTT 481 533 1012 Antisense
Sequence Source Affymetrix Proprietary Database