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[178840_at]

Description F46A9.2 /REP_DB=WormBase Gene ID /WP=CE10574 /TR=Q93730 /GB=CAB03107.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.6
(-3)
A 		2.1
(-2.4)
A 		6.9
(3)
A 		1.7
(-2.9)
A 		5
B 2.7
(-2.1)
A 		2.7
(-2.1)
A 		3.3
(3)
A 		2.6
(-3)
A 		1
C 2.2
(-3)
A 		3
(-0.3)
A 		2.6
(-1.7)
A 		4
(3)
A 		2
avr 2.2
(-3) 		2.6
(-1.9) 		4.3
(3) 		2.8
(-1.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 6.2
(-2.2)
A 		2.5
(-2.8)
A 		1.4
(-3)
A 		2.5
(-2.8)
A 		22.5
(0.4)
A 		38.8
(3)
A 		37
B 1.4
(-3)
A 		1.2
(-3)
A 		3.1
(-2.8)
A 		1.6
(-3)
A 		56.7
(3)
A 		40.2
(1.2)
P 		56
C 1.3
(-3)
A 		2.4
(-2.9)
A 		3.1
(-2.9)
A 		2.7
(-2.9)
A 		19.2
(-1.6)
A 		75.7
(3)
A 		74
avr 3
(-2.9) 		2
(-3) 		2.5
(-2.9) 		2.3
(-3) 		32.8
(0.7) 		51.6
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.6
(-1.5)
A 		0.4
(-2.3)
A 		1.8
(3)
A 		0.2
(-3)
A 		2
B 0.9
(3)
A 		0.7
(-1)
A 		0.8
(1)
A 		0.6
(-3)
A 		0
C 0.7
(-3)
A 		0.9
(3)
A 		0.9
(3)
A 		0.7
(-3)
A 		0
avr 0.7
(-1.3) 		0.7
(-1.3) 		1.2
(3) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.2
(-2.4)
A 		0.9
(-2.6)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		6.8
(1.2)
A 		9.5
(3)
A 		9
B 0.5
(-3)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		0.4
(-3)
A 		23.1
(3)
A 		15
(0.9)
P 		23
C 0.5
(-3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		0.5
(-3)
A 		6.2
(-1.6)
A 		25.3
(3)
A 		25
avr 0.7
(-2.9) 		0.7
(-2.9) 		0.6
(-3) 		0.5
(-3) 		12
(1.3) 		16.6
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178840_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.664
Sequence Type Exemplar sequence
Representative Public ID F46A9.2 NCBI
Target Description F46A9.2 /REP_DB=WormBase Gene ID /WP=CE10574 /TR=Q93730 /GB=CAB03107.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060109 NCBI Caenorhabditis elegans F46A9.2 (F46A9.2) mRNA, complete cds. 11/11 None
SNAP00000008776 ENSEMBL cdna:SNAP chromosome:CEL140:I:9467427:9468642:1 11/11 None
GENEFINDER00000008783 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9467427:9469711:1 11/11 None
F46A9.2 ENSEMBL cdna:known chromosome:CEL140:I:9467427:9468642:1 gene:F46A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9467357-9468573(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46A9.2
Entrez Gene 185827 Entrez gene
SwissProt Q93730 EMBL-EBI
WormBase CE10574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03107 Hypothetical protein F46A9.2 [Caenorhabditis elegans] ref|NP_492510.1| F46A9.2 [Caenorhabditis elegans] 1.0E-148
blast CAB03107 Hypothetical protein F46A9.2 [Caenorhabditis elegans] ref|NP_492510.1| F46A9.2 [Caenorhabditis elegans] 1.0E-147
blast CAB03106 Hypothetical protein F46A9.1 [Caenorhabditis elegans] ref|NP_492509.1| F46A9.1 [Caenorhabditis elegans] 4.0E-45
blast CAB03106 Hypothetical protein F46A9.1 [Caenorhabditis elegans] ref|NP_492509.1| F46A9.1 [Caenorhabditis elegans] 6.0E-45
blast CAA22331 Hypothetical protein Y18D10A.21 [Caenorhabditis elegans] ref|NP_493259.2| Y18D10A.21 [Caenorhabditis elegans] 4.0E-18
Sequence
Target Sequence 
>C. ELEGANS:178840_AT
tcaagttcactcacttttcttcgaaattgttggtgcaagatgcaagcgtggagtcacttc
tcaagaatttcatattctttctgaaaatgagacaatgacttttgaagttggtatgaagga
tttgaataacgtgtcatacgaaaactatcaagctgcgaatctcttgtcacctgccggttt
tatcactttcacacatttcaaatcgcttcgaaaggatgatgcatcatggggtgttaagga
tccgaagaaactgatgaaagttgtcacaaaaggtgatggtggacgttataacttggagaa
acttcttgtggaaaccgaaaccgattcgattaaaaagatttcagaggattttgcaatgat
cttgcagcagggaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGTTCACTCACTTTTCTTCGAA 24 633 270 Antisense
GATGCAAGCGTGGAGTCACTTCTCA 259 413 308 Antisense
GTCACTTCTCAAGAATTTCATATTC 559 465 322 Antisense
GTCATACGAAAACTATCAAGCTGCG 342 467 402 Antisense
CAAGCTGCGAATCTCTTGTCACCTG 652 185 418 Antisense
CGGTTTTATCACTTTCACACATTTC 407 243 444 Antisense
TTCACACATTTCAAATCGCTTCGAA 551 685 457 Antisense
ATCGCTTCGAAAGGATGATGCATCA 137 37 471 Antisense
GCATCATGGGGTGTTAAGGATCCGA 483 247 490 Antisense
GGTGATGGTGGACGTTATAACTTGG 331 499 541 Antisense
GCAATGATCTTGCAGCAGGGAATGG 63 323 622 Antisense
Sequence Source Affymetrix Proprietary Database