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[178838_at]

Description F16H6.4 /REP_DB=WormBase Gene ID /WP=CE18600 /TR=Q9XV89 /GB=CAB04130.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 5.8
(1.3)
A 		2.2
(-3)
A 		7.2
(3)
A 		2.6
(-2.5)
A 		5
B 6.4
(3)
A 		3.1
(-2.7)
A 		2.9
(-3)
A 		5.6
(1.6)
A 		4
C 1.6
(-3)
A 		3.2
(-2.9)
A 		2.2
(-3)
A 		81.1
(3)
A 		80
avr 4.6
(-2.6) 		2.8
(-3) 		4.1
(-2.7) 		29.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 32.3
(3)
A 		10.6
(-1.2)
A 		4.1
(-2.5)
A 		7.5
(-1.8)
A 		5
(-2.3)
A 		1.5
(-3)
A 		31
B 4.7
(-2.4)
A 		7.8
(-1.8)
A 		32.8
(3)
A 		4.7
(-2.4)
A 		3.6
(-2.6)
A 		1.7
(-3)
A 		31
C 9.3
(3)
A 		7.1
(1.1)
A 		8.8
(2.6)
A 		8.2
(2.1)
A 		2.3
(-3)
A 		4.5
(-1.1)
A 		7
avr 15.4
(3) 		8.5
(-0.2) 		15.2
(2.9) 		6.8
(-1) 		3.6
(-2.5) 		2.6
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.1
(3)
A 		0.5
(-2.6)
A 		1.9
(2.3)
A 		0.4
(-3)
A 		2
B 2
(3)
A 		0.8
(-2.5)
A 		0.7
(-3)
A 		1.2
(-0.7)
A 		1
C 0.5
(-3)
A 		0.9
(-2.8)
A 		0.8
(-2.9)
A 		13.7
(3)
A 		13
avr 1.5
(-1.9) 		0.7
(-3) 		1.1
(-2.5) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6
(3)
A 		3.8
(0.6)
A 		0.9
(-2.5)
A 		1.9
(-1.4)
A 		1.5
(-1.8)
A 		0.4
(-3)
A 		6
B 1.6
(-2.2)
A 		2.6
(-1.4)
A 		8
(3)
A 		1.2
(-2.5)
A 		1.5
(-2.3)
A 		0.6
(-3)
A 		7
C 3.4
(3)
A 		2.2
(0.3)
A 		2.2
(0.3)
A 		1.7
(-0.8)
A 		0.7
(-3)
A 		1.5
(-1.2)
A 		3
avr 3.7
(3) 		2.9
(1.3) 		3.7
(3) 		1.6
(-1.3) 		1.2
(-2.2) 		0.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13315
Sequence Type Exemplar sequence
Representative Public ID F16H6.4 NCBI
Target Description F16H6.4 /REP_DB=WormBase Gene ID /WP=CE18600 /TR=Q9XV89 /GB=CAB04130.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075158(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075158 NCBI Caenorhabditis elegans F16H6.4 (F16H6.4) mRNA, complete cds. 11/11 None
SNAP00000001296 ENSEMBL cdna:SNAP chromosome:CEL140:V:18194050:18205979:1 9/11 None
GENEFINDER00000001306 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18197880:18205277:1 11/11 None
F16H6.4 ENSEMBL cdna:known chromosome:CEL140:V:18201468:18203328:1 gene:F16H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18201467-18203328(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16H6.4
Entrez Gene 184591 Entrez gene
SwissProt Q9XV89 EMBL-EBI
WormBase CE18600 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04128 Hypothetical protein F16H6.1 [Caenorhabditis elegans] ref|NP_507557.1| C-type LECtin family member (clec-42) [Caenorhabditis elegans] 0.0
blast CAB02691 Hypothetical protein B0365.6 [Caenorhabditis elegans] ref|NP_506271.1| C-type LECtin family member (clec-41) [Caenorhabditis elegans] 0.0
blast CAE64660 Hypothetical protein CBG09432 [Caenorhabditis briggsae] 0.0
blast CAB04129 Hypothetical protein F16H6.3 [Caenorhabditis elegans] ref|NP_507558.1| F16H6.3 [Caenorhabditis elegans] 1.0E-106
blast CAB04131 Hypothetical protein F16H6.5 [Caenorhabditis elegans] ref|NP_507560.1| F16H6.5 [Caenorhabditis elegans] 9.0E-92
blast CAB04130 Hypothetical protein F16H6.4 [Caenorhabditis elegans] ref|NP_507559.1| F16H6.4 [Caenorhabditis elegans] 8.0E-91
blast CAB04130 Hypothetical protein F16H6.4 [Caenorhabditis elegans] ref|NP_507559.1| F16H6.4 [Caenorhabditis elegans] 5.0E-90
blast CAB04125 Hypothetical protein F16H6.7 [Caenorhabditis elegans] ref|NP_507562.1| F16H6.7 [Caenorhabditis elegans] 7.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.0E-126
Pfam IPR001304 EMBL-EBI C-type lectin 3.9E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.3
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.8E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.6E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.2E-8
Pfam IPR000859 EMBL-EBI CUB 3.2E-9
Pfam IPR000859 EMBL-EBI CUB 1.9E-9
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.5E-107
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 8.4E-102
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.3
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.8E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 0.035
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.0E-126
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 8.4E-102
Sequence
Target Sequence 
>C. ELEGANS:178838_AT
gtgcaacaagtacccagatttcgatgatgaagaaagagtaagacgtgtggacgatgactt
tcgtgatgtcataacagtattcgatgccccatttgaaggaaaatcgccaagtccagcagt
tatcgttttcgatgaattggtggactctgatggatcaagcaagtatcttaactttaaaat
ggaacaatcatatgaaaaagtggatgaaattccggagaagatagatgctgaacgaattcg
ttacgctattcatctgggctctcactcgcaaaaaaatgtgctccaaatctttcaatctgc
ttattccgatggttatactgaagaagacaaaaatggaaaagttccagtcgggggtaaagt
caagtgtgctgaaactgaaactggtttcagaaccaagatcaattgcgaaaacgtcgtaac
ggcggtcaatgaatatatggattcgaatagggaaaagtttggagaactgagaatagagac
cttgaataaggcggagagaaatctcgacggcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAACAAGTACCCAGATTTCGAT 133 481 24 Antisense
AGACGTGTGGACGATGACTTTCGTG 188 71 64 Antisense
GACTTTCGTGATGTCATAACAGTAT 100 373 79 Antisense
ATAACAGTATTCGATGCCCCATTTG 662 23 94 Antisense
GAAAATCGCCAAGTCCAGCAGTTAT 388 353 122 Antisense
AAGTCCAGCAGTTATCGTTTTCGAT 502 157 132 Antisense
ATTGGTGGACTCTGATGGATCAAGC 669 3 159 Antisense
TTCGTTACGCTATTCATCTGGGCTC 24 695 260 Antisense
CTGCTTATTCCGATGGTTATACTGA 71 237 320 Antisense
GAAAACGTCGTAACGGCGGTCAATG 449 353 430 Antisense
AGGCGGAGAGAAATCTCGACGGCTA 502 53 512 Antisense
Sequence Source Affymetrix Proprietary Database