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[178836_at]

Description F40F8.8 /REP_DB=WormBase Gene ID /WP=CE05847 /TR=Q20232 /GB=CAA93266.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 247.4
(3)
P 		127.4
(-3)
A 		135.5
(-2.6)
A 		234
(2.3)
P 		120
B 388.8
(3)
P 		173
(-1.4)
A 		91.4
(-3)
A 		276.9
(0.7)
P 		297
C 364.7
(3)
P 		175
(-1.6)
A 		119.6
(-3)
A 		245.1
(0.1)
A 		245
avr 333.6
(3) 		158.5
(-1.8) 		115.5
(-3) 		252
(0.8) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 212.8
(2.5)
M 		225
(3)
A 		101.4
(-1.9)
A 		147.5
(-0.1)
A 		74.8
(-3)
A 		91.8
(-2.3)
A 		150
B 211.4
(3)
P 		194.2
(2.3)
P 		78.8
(-2.4)
A 		120.3
(-0.7)
A 		83.9
(-2.2)
A 		63.6
(-3)
A 		148
C 293.2
(3)
P 		141.5
(-1.4)
A 		187.9
(-0.1)
A 		95.7
(-2.8)
A 		88.3
(-3)
A 		158.6
(-0.9)
A 		205
avr 239.1
(3) 		186.9
(1) 		122.7
(-1.5) 		121.2
(-1.5) 		82.3
(-3) 		104.7
(-2.1) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 90.1
(3)
P 		27.7
(-3)
A 		35.4
(-2.3)
A 		34.3
(-2.4)
P 		62
B 124
(3)
P 		42.7
(-1.7)
A 		21.2
(-3)
A 		59
(-0.8)
P 		103
C 120.7
(3)
P 		50.3
(-2.3)
A 		41.7
(-3)
A 		41.3
(-3)
A 		79
avr 111.6
(3) 		40.2
(-2.4) 		32.8
(-3) 		44.9
(-2.1) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 39.2
(-1.2)
M 		80
(3)
A 		22.1
(-3)
A 		37.4
(-1.4)
A 		22.6
(-2.9)
A 		22.3
(-3)
A 		58
B 73.6
(3)
P 		64.7
(2)
P 		19.1
(-3)
A 		31.9
(-1.6)
A 		34.1
(-1.3)
A 		23.7
(-2.5)
A 		55
C 108.7
(3)
P 		43.2
(-1.4)
A 		47.8
(-1.1)
A 		19.3
(-3)
A 		28.6
(-2.4)
A 		53.1
(-0.7)
A 		89
avr 73.8
(3) 		62.6
(1.5) 		29.7
(-2.8) 		29.5
(-2.9) 		28.4
(-3) 		33
(-2.4) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2605
Sequence Type Exemplar sequence
Representative Public ID F40F8.8 NCBI
Target Description F40F8.8 /REP_DB=WormBase Gene ID /WP=CE05847 /TR=Q20232 /GB=CAA93266.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063989 NCBI Caenorhabditis elegans F40F8.8 (F40F8.8) mRNA, complete cds. 11/11 None
SNAP00000001355 ENSEMBL cdna:SNAP chromosome:CEL140:II:11147363:11150040:1 11/11 None
GENEFINDER00000001357 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11147451:11150040:1 11/11 None
F40F8.8 ENSEMBL cdna:known chromosome:CEL140:II:11145756:11150288:1 gene:F40F8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11147447-11150037(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F8.8
Entrez Gene 185541 Entrez gene
SwissProt Q20232 EMBL-EBI
WormBase CE05847 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93266 Hypothetical protein F40F8.8 [Caenorhabditis elegans] ref|NP_496390.1| F40F8.8 [Caenorhabditis elegans] 0.0
blast CAE59558 Hypothetical protein CBG02955 [Caenorhabditis briggsae] 0.0
blast EAA14936 ENSANGP00000012313 [Anopheles gambiae str. PEST] ref|XP_320049.2| ENSANGP00000012313 [Anopheles gambiae str. PEST] 2.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-35
Pfam IPR000698 EMBL-EBI Arrestin 2.6E-39
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-35
Pfam IPR000698 EMBL-EBI Arrestin 2.6E-39
Sequence
Target Sequence 
>C. ELEGANS:178836_AT
gattcgacgctggagcagccgatccgattgccagtggtaccaccaacgctagtcggtgtt
tgccgtcttattcaaatctattacgctctacgagtttgcatggaagatgagaaaggaaat
gagtgcttgcatattgacttccctttgacagttgcaacaattccgtacagaatcccaaat
gccccaccgccaccggttgattacgatttctgctcgaaccacgtggaaggtggtaaatac
gtgtcgccggagttccgattggggcaggtttatgatggagaaggcgaggaaatcaataag
gaagaggagattgttctctaccgaccggtttatgtaaaattggcggatcgaaggattggc
tcgccgcatgtgtcgaaagatttcagatcgggatcgttcacacgaatcgccgactccagc
ttggcgctggtaaccgaaccaaacggatcccgacgtcgaagtattctggtcgcatcgaat
ccatgtttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGACGCTGGAGCAGCCGATCC 243 433 772 Antisense
GATTGCCAGTGGTACCACCAACGCT 82 433 797 Antisense
GCTAGTCGGTGTTTGCCGTCTTATT 374 303 819 Antisense
CTTGCATATTGACTTCCCTTTGACA 353 219 897 Antisense
CACCGCCACCGGTTGATTACGATTT 181 199 956 Antisense
TTACGATTTCTGCTCGAACCACGTG 557 681 972 Antisense
AATACGTGTCGCCGGAGTTCCGATT 449 171 1007 Antisense
ATCGAAGGATTGGCTCGCCGCATGT 407 37 1118 Antisense
CGGGATCGTTCACACGAATCGCCGA 224 245 1160 Antisense
GACGTCGAAGTATTCTGGTCGCATC 60 377 1223 Antisense
GGTCGCATCGAATCCATGTTTGGCA 709 501 1239 Antisense
Sequence Source Affymetrix Proprietary Database