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[178835_s_at]

Description B0001.5 /REP_DB=WormBase Gene ID /WP=CE05143 /TR=Q17414 /GB=CAA93454.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 308.5
(1.9)
P 		238.3
(-3)
P 		324.4
(3)
P 		316.1
(2.4)
P 		86
B 282.5
(0.6)
P 		272.4
(-0.1)
P 		315.6
(3)
P 		231.8
(-3)
P 		84
C 354.9
(3)
P 		309.3
(1.1)
P 		213.8
(-3)
P 		242.1
(-1.8)
P 		141
avr 315.3
(3) 		273.3
(-1.8) 		284.6
(-0.5) 		263.3
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 226.7
(-3)
P 		241.7
(-2.6)
P 		249.1
(-2.4)
P 		273.9
(-1.8)
P 		363.9
(0.6)
P 		458.3
(3)
P 		232
B 220.8
(-3)
P 		285.9
(-1.7)
P 		366.9
(-0.1)
P 		294.2
(-1.5)
P 		299.3
(-1.4)
P 		522.2
(3)
P 		301
C 253.5
(-1.9)
P 		349.2
(-0.6)
P 		176.2
(-3)
P 		331.5
(-0.8)
P 		295.1
(-1.3)
P 		603
(3)
P 		427
avr 233.7
(-3) 		292.3
(-1.8) 		264.1
(-2.4) 		299.9
(-1.6) 		319.4
(-1.3) 		527.8
(3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 112.3
(3)
P 		51.7
(-2.5)
P 		84.8
(0.5)
P 		46.3
(-3)
P 		66
B 90.1
(3)
P 		67.3
(-0.4)
P 		73.1
(0.5)
P 		49.4
(-3)
P 		41
C 117.5
(3)
P 		88.9
(0.8)
P 		74.5
(-0.4)
P 		40.8
(-3)
P 		77
avr 106.6
(3) 		69.3
(-0.7) 		77.5
(0.1) 		45.5
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 41.8
(-3)
P 		86
(0.8)
P 		54.3
(-1.9)
P 		69.5
(-0.6)
P 		109.8
(2.8)
P 		111.6
(3)
P 		70
B 76.8
(-3)
P 		95.2
(-2.1)
P 		89.1
(-2.4)
P 		77.9
(-2.9)
P 		121.6
(-0.7)
P 		194.7
(3)
P 		118
C 94
(-1.1)
P 		106.5
(-0.6)
P 		44.9
(-3)
P 		66.7
(-2.2)
P 		95.5
(-1.1)
P 		201.9
(3)
P 		157
avr 70.9
(-2.5) 		95.9
(-1.1) 		62.8
(-3) 		71.4
(-2.5) 		109
(-0.4) 		169.4
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178835_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9757
Sequence Type Exemplar sequence
Representative Public ID B0001.5 NCBI
Target Description B0001.5 /REP_DB=WormBase Gene ID /WP=CE05143 /TR=Q17414 /GB=CAA93454.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069904(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069904 NCBI Caenorhabditis elegans B0001.8 (B0001.8) mRNA, complete cds. 10/11 None
SNAP00000035711 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12138993:12143296:-1 10/11 None
GENEFINDER00000035720 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12138993:12150935:-1 10/11 None
B0001.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:12138831:12141028:-1 gene:B0001.8 10/11 None
B0001.8.3 ENSEMBL cdna:known chromosome:CEL140:IV:12138831:12141029:-1 gene:B0001.8 10/11 None
B0001.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:12138831:12141025:-1 gene:B0001.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12138998-12143226(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0001.8
Entrez Gene 178161 Entrez gene
SwissProt Q8WQH2 EMBL-EBI
WormBase CE31864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD01081 Hypothetical protein B0001.8 [Caenorhabditis elegans] ref|NP_502305.2| B0001.8 [Caenorhabditis elegans] 0.0
blast CAA93454 Hypothetical protein B0001.5 [Caenorhabditis elegans] ref|NP_502306.1| B0001.5 [Caenorhabditis elegans] 0.0
blast CAA93451 Hypothetical protein B0001.2 [Caenorhabditis elegans] ref|NP_502308.2| B0001.2 [Caenorhabditis elegans] 0.0
blast CAA93452 Hypothetical protein B0001.3 [Caenorhabditis elegans] ref|NP_502307.1| B0001.3 [Caenorhabditis elegans] 0.0
blast CAE62191 Hypothetical protein CBG06239 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 5.0E-70
Sequence
Target Sequence 
>C. ELEGANS:178835_S_AT
cgtgcaccaacgaccgattcagaagattctgacgacgatgctgctggattcaatagaact
aaagaaacaccaattctaagggatcaaaaacccactgcgaagaaagagcgtccagtttca
ccaaaatcttcctccgactctgaagattctgatgcgagttttcgaagtaaactcccaccg
cattttttcgctaagacaaaggccaagacagcctcaggcgcatcatctgtaaagtctttt
gctagccaggatactcgcaataaatccaatgcgggtgattctcgtagtcttggagggacg
agcaaggtaaattgtttctttttaaatccctacattataaatttctttcagaacttcaca
gattccggcatgccagatgtcagcaaactcaacgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGCACCAACGACCGATTCAGAAG 108 245 2566 Antisense
GATTCTGACGACGATGCTGCTGGAT 546 431 2590 Antisense
AGAAAGAGCGTCCAGTTTCACCAAA 1 73 2666 Antisense
CAAAATCTTCCTCCGACTCTGAAGA 331 189 2687 Antisense
AAAGGCCAAGACAGCCTCAGGCGCA 359 121 2763 Antisense
GGCGCATCATCTGTAAAGTCTTTTG 444 541 2782 Antisense
GCTAGCCAGGATACTCGCAATAAAT 542 301 2806 Antisense
CAATGCGGGTGATTCTCGTAGTCTT 615 181 2832 Antisense
TTCAGAACTTCACAGATTCCGGCAT 241 685 2912 Antisense
GATTCCGGCATGCCAGATGTCAGCA 677 431 2926 Antisense
GCCAGATGTCAGCAAACTCAACGTT 652 277 2937 Antisense
Sequence Source Affymetrix Proprietary Database