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[178834_at]

Description F47B8.2 /REP_DB=WormBase Gene ID /WP=CE10634 /TR=Q20525 /GB=CAB01200.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 45      6grp_total > 84      4grp_total > 12      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1952
1 2 3 4 range
A 1124.4
(-1.2)
P 		815.1
(-2.3)
P 		639.1
(-3)
P 		2228.2
(3)
P 		1589
B 1206
(-1)
P 		710.8
(-2.5)
P 		562.8
(-3)
P 		2514.6
(3)
P 		1952
C 1202.2
(-0.9)
P 		676.6
(-2.8)
P 		606.5
(-3)
P 		2309.6
(3)
P 		1703
avr 1177.5
(-1) 		734.2
(-2.5) 		602.8
(-3) 		2350.8
(3) 		1748

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1998
1 2 3 4 5 6 range
A 1723.8
(-2.5)
P 		1577.5
(-3)
P 		2435.1
(-0.3)
P 		3469.7
(3)
P 		2988.7
(1.5)
P 		2412.1
(-0.4)
P 		1892
B 1554.3
(-3)
P 		1640.3
(-2.7)
P 		2018.6
(-1.3)
P 		3185.2
(2.9)
P 		3202.2
(3)
P 		2853.6
(1.7)
P 		1648
C 1471.5
(-3)
P 		1556
(-2.7)
P 		2038.3
(-1.2)
P 		3291.2
(2.7)
P 		2691.6
(0.9)
P 		3371.5
(3)
P 		1900
avr 1583.2
(-3) 		1591.3
(-3) 		2164
(-1) 		3315.4
(3) 		2960.8
(1.8) 		2879.1
(1.5) 		1732
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 406
1 2 3 4 range
A 409.4
(3)
P 		176.9
(-2.8)
P 		167.1
(-3)
P 		326.2
(0.9)
P 		242
B 384.6
(0.8)
P 		175.6
(-2.3)
P 		130.4
(-3)
P 		535.9
(3)
P 		406
C 398
(3)
P 		194.5
(-3)
P 		211.4
(-2.5)
P 		389.4
(2.7)
P 		204
avr 397.3
(2.5) 		182.3
(-2.7) 		169.6
(-3) 		417.2
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 983
1 2 3 4 5 6 range
A 317.8
(-3)
P 		561.1
(-0.5)
P 		530.3
(-0.8)
P 		880
(2.8)
P 		901.8
(3)
P 		587.3
(-0.2)
P 		584
B 540.8
(-2.6)
P 		546
(-2.6)
P 		490.2
(-3)
P 		843.7
(-0.4)
P 		1301
(3)
P 		1064.1
(1.2)
P 		811
C 545.4
(-2.4)
P 		474.8
(-3)
P 		518.8
(-2.6)
P 		661.9
(-1.3)
P 		871
(0.6)
P 		1128.6
(3)
P 		654
avr 468
(-3) 		527.3
(-2.4) 		513.1
(-2.5) 		795.2
(0.5) 		1024.6
(3) 		926.7
(1.9) 		557
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13290
Sequence Type Exemplar sequence
Representative Public ID F47B8.2 NCBI
Target Description F47B8.2 /REP_DB=WormBase Gene ID /WP=CE10634 /TR=Q20525 /GB=CAB01200.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074147 NCBI Caenorhabditis elegans F47B8.2 (F47B8.2) mRNA, complete cds. 11/11 None
SNAP00000011434 ENSEMBL cdna:SNAP chromosome:CEL140:V:14318607:14319212:-1 11/11 None
GENEFINDER00000011452 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14318607:14319212:-1 11/11 None
F47B8.2 ENSEMBL cdna:known chromosome:CEL140:V:14318607:14319212:-1 gene:F47B8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14318606-14319212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B8.2
Entrez Gene 185895 Entrez gene
SwissProt Q20525 EMBL-EBI
WormBase CE10634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01200 Hypothetical protein F47B8.2 [Caenorhabditis elegans] ref|NP_506548.1| F47B8.2 [Caenorhabditis elegans] 8.0E-79
blast CAB01200 Hypothetical protein F47B8.2 [Caenorhabditis elegans] ref|NP_506548.1| F47B8.2 [Caenorhabditis elegans] 4.0E-75
blast CAE60930 Hypothetical protein CBG04652 [Caenorhabditis briggsae] 8.0E-60
blast CAE60930 Hypothetical protein CBG04652 [Caenorhabditis briggsae] 4.0E-56
blast CAB01201 Hypothetical protein F47B8.1 [Caenorhabditis elegans] ref|NP_506547.1| F47B8.1 [Caenorhabditis elegans] 1.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506548.1 4 24-46,50-68,80-102,138-160
F47B8.2 4 24-46,50-68,80-102,138-160
SNAP00000011434 4 24-46,50-68,80-102,138-160
GENEFINDER00000011452 4 24-46,50-68,80-102,132-154
Sequence
Target Sequence 
>C. ELEGANS:178834_AT
caatccaccactaggtcttgagcctccaaaactttgctgcatcccagctcgtcctcttgt
atgtgtcctgtcagttcttggtgccgcccgtggaatcggtctcatcattatttcgaccaa
ttggggagaccgtgtcactgatctcatcttcgtctttctcaaccttcttctattgttcgg
agccgcttggaacaacgagccagccttgaaatggtcccagagagttgtcgcaattgcagt
tgttcttgctgtccttcagtttatgatctggccagttatgtttgccagtttcactgcttc
tggattggctgatacaaataaaaccatgtttgaggtggaggatgttatttttaaaactca
agaggaaaagaaaaagatgttctatcgtggaatgctttctggatatgctcttgaatttgg
aactgtcttgttgatcggagctgaaatcctcaagtacgtcctagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCCACCACTAGGTCTTGAGCCT 158 181 27 Antisense
TGAGCCTCCAAAACTTTGCTGCATC 13 571 45 Antisense
CTCTTGTATGTGTCCTGTCAGTTCT 304 229 80 Antisense
GTGGAATCGGTCTCATCATTATTTC 518 491 116 Antisense
TGGGGAGACCGTGTCACTGATCTCA 625 551 148 Antisense
TCAACCTTCTTCTATTGTTCGGAGC 450 631 185 Antisense
GAGCCAGCCTTGAAATGGTCCCAGA 385 385 223 Antisense
AATTGCAGTTGTTCTTGCTGTCCTT 344 179 258 Antisense
AGTTTCACTGCTTCTGGATTGGCTG 469 63 313 Antisense
AACTGTCTTGTTGATCGGAGCTGAA 408 143 447 Antisense
GAAATCCTCAAGTACGTCCTAGTCA 499 359 469 Antisense
Sequence Source Affymetrix Proprietary Database