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[178833_s_at]

Description T12G3.6 /REP_DB=WormBase Gene ID /WP=CE06442 /TR=Q22434 /GB=CAA92980.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 26.2
(-3)
A 		32.8
(-1.8)
A 		42.9
(0)
A 		59.2
(3)
A 		33
B 26.8
(-1.2)
A 		39.9
(-0.1)
A 		6
(-3)
A 		77.2
(3)
A 		71
C 38.1
(0.4)
A 		3.9
(-3)
A 		22.4
(-1.2)
A 		64.4
(3)
A 		61
avr 30.4
(-2.1) 		25.5
(-2.8) 		23.8
(-3) 		66.9
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 46.1
(-2.7)
A 		44
(-2.7)
A 		20.6
(-3)
A 		63.5
(-2.5)
A 		359
(0.7)
P 		574.2
(3)
P 		554
B 48.2
(-2.9)
A 		56.1
(-2.8)
A 		32.2
(-3)
A 		75.8
(-2.6)
A 		365.2
(0)
P 		697.3
(3)
P 		665
C 11.7
(-3)
A 		14.6
(-3)
A 		48.5
(-2.7)
A 		18
(-2.9)
A 		315.8
(-0.5)
P 		743.4
(3)
P 		732
avr 35.3
(-3) 		38.2
(-3) 		33.8
(-3) 		52.4
(-2.8) 		346.7
(-0.1) 		671.6
(3) 		638
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.5
(0.5)
A 		7.1
(-3)
A 		11.2
(3)
A 		8.7
(-0.7)
A 		4
B 8.5
(-0.2)
A 		9.9
(0.4)
A 		1.4
(-3)
A 		16.5
(3)
A 		15
C 12.6
(3)
A 		1.1
(-3)
A 		7.8
(0.5)
A 		10.9
(2.1)
A 		12
avr 10.2
(1.2) 		6
(-3) 		6.8
(-2.2) 		12
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 8.5
(-2.8)
A 		15.6
(-2.5)
A 		4.5
(-3)
A 		16.1
(-2.5)
A 		108.3
(1.6)
P 		139.8
(3)
P 		135
B 16.8
(-2.8)
A 		18.7
(-2.7)
A 		7.8
(-3)
A 		20.1
(-2.7)
A 		148.4
(0.3)
P 		260
(3)
P 		252
C 4.3
(-3)
A 		4.5
(-3)
A 		12.4
(-2.8)
A 		3.6
(-3)
A 		102.2
(-0.6)
P 		248.9
(3)
P 		245
avr 9.9
(-3) 		12.9
(-2.9) 		8.2
(-3) 		13.3
(-2.9) 		119.6
(0.2) 		216.2
(3) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178833_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9571
Sequence Type Exemplar sequence
Representative Public ID T12G3.6 NCBI
Target Description T12G3.6 /REP_DB=WormBase Gene ID /WP=CE06442 /TR=Q22434 /GB=CAA92980.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069877 NCBI Caenorhabditis elegans T12G3.6 (T12G3.6) mRNA, complete cds. 11/11 None
SNAP00000042345 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12030227:12030845:-1 10/11 None
GENEFINDER00000042354 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12030227:12030845:-1 10/11 None
T12G3.6 ENSEMBL cdna:known chromosome:CEL140:IV:12030134:12031242:-1 gene:T12G3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12030232-12031248(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12G3.6
Entrez Gene 178138 Entrez gene
SwissProt Q22434 EMBL-EBI
WormBase CE06442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92980 Hypothetical protein T12G3.6 [Caenorhabditis elegans] ref|NP_502278.1| T12G3.6 [Caenorhabditis elegans] 1.0E-122
blast CAA92980 Hypothetical protein T12G3.6 [Caenorhabditis elegans] ref|NP_502278.1| T12G3.6 [Caenorhabditis elegans] 1.0E-94
blast CAE62164 Hypothetical protein CBG06211 [Caenorhabditis briggsae] 1.0E-25
blast CAE62164 Hypothetical protein CBG06211 [Caenorhabditis briggsae] 3.0E-25
Sequence
Target Sequence 
>C. ELEGANS:178833_S_AT
gctcctaataatggctccttctgttcccctccacgtaagacttgaaaggactccgacgat
caatttgttgaaatgtcacgaaaaaccactaactgaggatcaattgttccttcttctttc
caaatgccaacaacacacaaagaaatgcatgccatcagaagaagagatcgaccagtgggt
agaagtgtcttcgtcaaaaccacgcgaacagtcctcaaatcggggatcgaaaaaggattc
gtggaatcacagtatttttatgtataatttcttccaccgaagagggagcaacaagagagc
ggccaaatatctcgaaaaaatcgaaaacgggaagagcgagaaaattcgagctcgtgtctc
acagattcgtaaccttgatctcggatacatctcactccctatggaaacaattaatctgga
agatgcgaagcaaagagacaagctcaaggaaaaggctctagccgagactgctgaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCTAATAATGGCTCCTTCTGTT 237 299 141 Antisense
TTCCCCTCCACGTAAGACTTGAAAG 436 697 164 Antisense
GAAAGGACTCCGACGATCAATTTGT 225 361 184 Antisense
GAGGATCAATTGTTCCTTCTTCTTT 602 403 235 Antisense
CCTTCTTCTTTCCAAATGCCAACAA 398 269 249 Antisense
CCACGCGAACAGTCCTCAAATCGGG 21 275 340 Antisense
GAAAATTCGAGCTCGTGTCTCACAG 538 353 480 Antisense
GTGTCTCACAGATTCGTAACCTTGA 166 487 494 Antisense
GTAACCTTGATCTCGGATACATCTC 636 461 509 Antisense
GATACATCTCACTCCCTATGGAAAC 74 423 524 Antisense
GGCTCTAGCCGAGACTGCTGAATCG 232 539 594 Antisense
Sequence Source Affymetrix Proprietary Database