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[178832_at]

Description R07E3.7 /REP_DB=WormBase Gene ID /WP=CE02301 /TR=Q21813 /GB=CAA89073.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 27      6grp_highest_nonorm > 81      6grp_total > 91      4grp_total > 29      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 201.2
(1.1)
P 		223.3
(3)
P 		152.2
(-3)
P 		218.6
(2.6)
A 		71
B 242.2
(3)
P 		182.8
(-0.3)
M 		132.7
(-3)
A 		176.9
(-0.6)
P 		110
C 157
(-1.5)
P 		173.2
(-0.5)
P 		133.9
(-3)
P 		228.7
(3)
P 		95
avr 200.1
(2.3) 		193.1
(1.7) 		139.6
(-3) 		208.1
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 336.3
(1.2)
P 		177.7
(-3)
P 		198.9
(-2.4)
P 		360.9
(1.8)
P 		405.9
(3)
P 		216
(-2)
P 		228
B 181.6
(-3)
P 		186.8
(-2.8)
P 		254.1
(-0.9)
P 		377.8
(2.7)
P 		386.7
(3)
P 		217.9
(-1.9)
P 		205
C 165.5
(-3)
P 		239.4
(-1.4)
P 		215.5
(-1.9)
P 		447.8
(3)
P 		307.1
(0)
P 		238
(-1.5)
P 		282
avr 227.8
(-2.2) 		201.3
(-3) 		222.8
(-2.3) 		395.5
(3) 		366.6
(2.1) 		224
(-2.3) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 73.2
(3)
P 		48.5
(-0.6)
P 		39.8
(-1.9)
P 		32
(-3)
A 		41
B 77.2
(3)
P 		45.1
(-1.1)
M 		30.7
(-3)
A 		37.7
(-2.1)
P 		47
C 52
(3)
P 		49.8
(2)
P 		46.7
(0.6)
P 		38.6
(-3)
P 		13
avr 67.5
(3) 		47.8
(-0.8) 		39.1
(-2.4) 		36.1
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 62
(-1.6)
P 		63.2
(-1.5)
P 		43.3
(-3)
P 		91.5
(0.7)
P 		122.5
(3)
P 		52.6
(-2.3)
P 		79
B 63.2
(-2.9)
P 		62.2
(-3)
P 		61.7
(-3)
P 		100.1
(-0.6)
P 		157.1
(3)
P 		81.3
(-1.8)
P 		95
C 61.4
(-2.1)
P 		73.1
(-0.5)
P 		54.9
(-3)
P 		90
(1.7)
P 		99.4
(3)
P 		79.7
(0.3)
P 		45
avr 62.2
(-2.3) 		66.2
(-1.9) 		53.3
(-3) 		93.9
(0.3) 		126.3
(3) 		71.2
(-1.5) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17204
Sequence Type Exemplar sequence
Representative Public ID R07E3.7 NCBI
Target Description R07E3.7 /REP_DB=WormBase Gene ID /WP=CE02301 /TR=Q21813 /GB=CAA89073.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077336 NCBI Caenorhabditis elegans R07E3.7 (R07E3.7) mRNA, complete cds. 11/11 None
SNAP00000043092 ENSEMBL cdna:SNAP chromosome:CEL140:X:10342199:10344002:-1 11/11 None
GENEFINDER00000043096 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10342199:10344008:-1 11/11 None
R07E3.7 ENSEMBL cdna:known chromosome:CEL140:X:10342199:10343981:-1 gene:R07E3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10342198-10343981(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07E3.7
Entrez Gene 187679 Entrez gene
SwissProt Q21813 EMBL-EBI
WormBase CE02301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA89073 Hypothetical protein R07E3.7 [Caenorhabditis elegans] ref|NP_509737.1| R07E3.7 [Caenorhabditis elegans] 1.0E-100
blast CAE70567 Hypothetical protein CBG17218 [Caenorhabditis briggsae] 5.0E-91
blast CAE70567 Hypothetical protein CBG17218 [Caenorhabditis briggsae] 9.0E-90
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509737.1 1 4-21
R07E3.7 1 4-21
SNAP00000043092 1 4-26
GENEFINDER00000043096 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:178832_AT
cggcattctggccgttctgttgattctcatcctatttttctgtatacgatcaaaagacaa
aaagcaacctccatcccctgccgaaccaaatagaagacttccgactagagcggagagcac
aattggaataaggccaaagattccaaatcccatttacaccataaacaccgctagtccaga
gacacgaggtaccagtattgcagatacattgacaacgagaaaattatctcaaatgtttga
ctccaagaaaagattttctacggctttttcccacagatctgcatatttcgactttgagaa
ctctccattgccaagacacaaggaataccttgacttcaatgatatcgagaatatggtgcc
aatgaagaaacaagtgacaacgccggaccgtcctagcattgattttctgaacgaaattca
tgaatcacatgcaaaaaccaaagagagcaaaacgaacgacgacaaaaagacacaaaagcc
taacgacaaacgagcagcggtccaacaagtattcgccgaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCATTCTGGCCGTTCTGTTGATT 107 243 30 Antisense
TGATTCTCATCCTATTTTTCTGTAT 571 563 50 Antisense
ATCCCCTGCCGAACCAAATAGAAGA 655 37 102 Antisense
GATTCCAAATCCCATTTACACCATA 329 431 168 Antisense
TTACACCATAAACACCGCTAGTCCA 650 681 183 Antisense
CCCACAGATCTGCATATTTCGACTT 250 259 299 Antisense
TTGAGAACTCTCCATTGCCAAGACA 633 703 323 Antisense
AGAAACAAGTGACAACGCCGGACCG 24 71 395 Antisense
GACCGTCCTAGCATTGATTTTCTGA 198 381 415 Antisense
ACGACAAACGAGCAGCGGTCCAACA 456 55 512 Antisense
GGTCCAACAAGTATTCGCCGAAGAA 136 503 528 Antisense
Sequence Source Affymetrix Proprietary Database