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[178831_at]

Description C31C9.4 /REP_DB=WormBase Gene ID /WP=CE25801 /TR=O45286 /GB=CAB05696.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 4.2
(0.1)
A 		2
(-3)
A 		6.3
(3)
A 		3.9
(-0.3)
A 		4
B 2.4
(-3)
A 		6.5
(1.1)
A 		8.4
(3)
A 		5.8
(0.4)
A 		6
C 5
(-2.5)
A 		4
(-2.8)
A 		25.5
(3)
A 		3.3
(-3)
A 		22
avr 3.9
(-3) 		4.2
(-2.8) 		13.4
(3) 		4.3
(-2.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 10.3
(-1.9)
A 		5.9
(-2.6)
A 		7.7
(-2.3)
A 		43.3
(3)
A 		24.9
(0.3)
A 		3.1
(-3)
A 		40
B 15.9
(0.1)
A 		27.7
(3)
A 		9.4
(-1.5)
A 		5.5
(-2.4)
A 		6.1
(-2.3)
A 		3.1
(-3)
A 		25
C 26.7
(0.7)
A 		20.3
(-0.4)
A 		33.3
(1.9)
A 		27.7
(0.9)
A 		39.8
(3)
A 		5.3
(-3)
A 		35
avr 17.6
(0.8) 		18
(0.9) 		16.8
(0.6) 		25.5
(3) 		23.6
(2.5) 		3.8
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.5
(2.5)
A 		0.4
(-3)
A 		1.6
(3)
A 		0.6
(-2)
A 		1
B 0.8
(-3)
A 		1.6
(1.4)
A 		1.9
(3)
A 		1.2
(-0.8)
A 		1
C 1.7
(-2.2)
A 		1.1
(-2.6)
A 		8.9
(3)
A 		0.6
(-3)
A 		8
avr 1.3
(-2.1) 		1
(-2.6) 		4.1
(3) 		0.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.9
(-2.4)
A 		2.1
(-2.2)
A 		1.7
(-2.5)
A 		11
(3)
A 		7.5
(0.9)
A 		0.8
(-3)
A 		10
B 5.5
(0.2)
A 		9.2
(3)
A 		2.3
(-2.2)
A 		1.4
(-2.9)
A 		2.5
(-2)
A 		1.2
(-3)
A 		8
C 9.9
(1.4)
A 		6.2
(-0.6)
A 		8.5
(0.6)
A 		5.6
(-0.9)
A 		12.9
(3)
A 		1.8
(-3)
A 		11
avr 5.8
(1.3) 		5.8
(1.3) 		4.2
(-0.2) 		6
(1.5) 		7.6
(3) 		1.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3536
Sequence Type Exemplar sequence
Representative Public ID C31C9.4 NCBI
Target Description C31C9.4 /REP_DB=WormBase Gene ID /WP=CE25801 /TR=O45286 /GB=CAB05696.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064469(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064469 NCBI Caenorhabditis elegans C31C9.4 (C31C9.4) mRNA, complete cds. 11/11 None
SNAP00000002046 ENSEMBL cdna:SNAP chromosome:CEL140:II:13649394:13654202:1 11/11 None
GENEFINDER00000002055 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13645677:13654779:1 11/11 None
C31C9.4 ENSEMBL cdna:known chromosome:CEL140:II:13645677:13655243:1 gene:C31C9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13645673-13655240(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31C9.4
Entrez Gene 183083 Entrez gene
SwissProt O45286 EMBL-EBI
WormBase CE37207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05696 Hypothetical protein C31C9.4 [Caenorhabditis elegans] ref|NP_496870.2| C31C9.4 [Caenorhabditis elegans] 0.0
blast T19605 hypothetical protein C31C9.5 - Caenorhabditis elegans 0.0
blast AAK39265 Hypothetical protein R11E3.3 [Caenorhabditis elegans] ref|NP_500640.1| R11E3.3 [Caenorhabditis elegans] 0.0
blast CAB05696 Hypothetical protein C31C9.4 [Caenorhabditis elegans] ref|NP_496870.2| C31C9.4 [Caenorhabditis elegans] 1.0E-168
blast T19605 hypothetical protein C31C9.5 - Caenorhabditis elegans 2.0E-70
blast CAB05695 Hypothetical protein C31C9.3 [Caenorhabditis elegans] ref|NP_496869.1| C31C9.3 [Caenorhabditis elegans] 9.0E-45
blast CAB05695 Hypothetical protein C31C9.3 [Caenorhabditis elegans] ref|NP_496869.1| C31C9.3 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.2E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.3E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.3E-32
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.8E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.3E-8
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 5.6E-63
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-21
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.3E-8
Sequence
Target Sequence 
>C. ELEGANS:178831_AT
gtccagtggtagattgtcttgtcttgacctcgtggacatcccgcaatggtcgtttaatga
gctgcatggaaagtacaaaaccaagtgtgaagaaactcgtattgaatacctttattaacc
acgaaaactatttcctactgaagaacgtgagagaagtacaacatatttccatagttatgg
tcccagacgccctagaagtagatcagttaattgaactcgagcaatggaaaaacgcagtgt
cggttagtgttaattacctgctcgattggaatatcgagcattttcatcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCAGTGGTAGATTGTCTTGTCTT 243 477 1310 Antisense
TGTCTTGTCTTGACCTCGTGGACAT 262 559 1324 Antisense
TGGACATCCCGCAATGGTCGTTTAA 581 547 1342 Antisense
ATGGTCGTTTAATGAGCTGCATGGA 110 51 1355 Antisense
GTATTGAATACCTTTATTAACCACG 446 451 1408 Antisense
TAACCACGAAAACTATTTCCTACTG 92 635 1425 Antisense
TCCATAGTTATGGTCCCAGACGCCC 377 585 1477 Antisense
GTCCCAGACGCCCTAGAAGTAGATC 324 425 1489 Antisense
GAAAAACGCAGTGTCGGTTAGTGTT 634 149 1536 Antisense
GTTAGTGTTAATTACCTGCTCGATT 238 447 1552 Antisense
GGAATATCGAGCATTTTCATCATTT 538 533 1577 Antisense
Sequence Source Affymetrix Proprietary Database