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[178830_at]

Description B0001.1 /REP_DB=WormBase Gene ID /WP=CE05139 /TR=Q17410 /GB=CAA93450.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 56      4grp_high_8_8 > 34      6grp_highest_nonorm > 57      6grp_total > 17      4grp_total > 37      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 995
1 2 3 4 range
A 2469.5
(0.9)
P 		2818.1
(3)
P 		1822.7
(-3)
P 		2249.2
(-0.4)
P 		995
B 2802.6
(3)
P 		2215
(-0.8)
P 		1877.9
(-3)
P 		2171.9
(-1.1)
P 		925
C 2686.8
(3)
P 		2156.8
(-1.1)
P 		1916.1
(-3)
P 		1932.7
(-2.9)
P 		771
avr 2653
(3) 		2396.6
(1) 		1872.2
(-3) 		2117.9
(-1.1) 		781

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1988
1 2 3 4 5 6 range
A 3867.6
(3)
P 		2486.2
(-1.5)
P 		2625
(-1.1)
P 		2263.1
(-2.3)
P 		2043.1
(-3)
P 		2355.2
(-2)
P 		1825
B 3667.3
(3)
P 		2521.5
(-1.4)
P 		3203.4
(1.2)
P 		2246.1
(-2.5)
P 		2108.1
(-3)
P 		2751.7
(-0.5)
P 		1559
C 3119.5
(3)
P 		2397.7
(-0.5)
P 		2443.2
(-0.3)
P 		2514
(0.1)
P 		1880
(-3)
P 		2843.2
(1.7)
P 		1240
avr 3551.5
(3) 		2468.5
(-1.2) 		2757.2
(-0.1) 		2341.1
(-1.7) 		2010.4
(-3) 		2650
(-0.5) 		1541
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 899.1
(3)
P 		611.7
(-0)
P 		476.5
(-1.4)
P 		329.2
(-3)
P 		570
B 893.7
(3)
P 		547.1
(-1.5)
P 		435.2
(-3)
P 		462.8
(-2.6)
P 		459
C 889.4
(3)
P 		620.1
(0.1)
P 		667.8
(0.6)
P 		325.9
(-3)
P 		564
avr 894.1
(3) 		593
(-0.5) 		526.5
(-1.2) 		372.6
(-3) 		522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 770
1 2 3 4 5 6 range
A 713
(-0.3)
P 		884.2
(3)
P 		571.7
(-3)
P 		574
(-3)
P 		616.5
(-2.1)
P 		573.4
(-3)
P 		313
B 1276
(3)
P 		839.3
(-0.8)
P 		777.9
(-1.4)
P 		594.9
(-3)
P 		856.5
(-0.7)
P 		1026.1
(0.8)
P 		681
C 1156.3
(3)
P 		731.6
(-0.9)
P 		621.8
(-1.9)
P 		505.6
(-3)
P 		608.3
(-2.1)
P 		951.8
(1.1)
P 		651
avr 1048.4
(3) 		818.4
(0.2) 		657.1
(-1.8) 		558.2
(-3) 		693.8
(-1.3) 		850.4
(0.6) 		490
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9375
Sequence Type Exemplar sequence
Representative Public ID B0001.1 NCBI
Target Description B0001.1 /REP_DB=WormBase Gene ID /WP=CE05139 /TR=Q17410 /GB=CAA93450.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069902 NCBI Caenorhabditis elegans B0001.1 (B0001.1) mRNA, complete cds. 11/11 None
SNAP00000035709 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12131768:12134890:1 11/11 None
GENEFINDER00000035716 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12129478:12134890:1 11/11 None
B0001.1 ENSEMBL cdna:known chromosome:CEL140:IV:12129475:12134890:1 gene:B0001.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12131479-12134896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0001.1
Entrez Gene 178159 Entrez gene
SwissProt Q17410 EMBL-EBI
WormBase CE32786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93450 Hypothetical protein B0001.1 [Caenorhabditis elegans] ref|NP_502303.2| B0001.1 [Caenorhabditis elegans] 1.0E-137
blast CAE62189 Hypothetical protein CBG06236 [Caenorhabditis briggsae] 1.0E-131
blast CAA93450 Hypothetical protein B0001.1 [Caenorhabditis elegans] ref|NP_502303.2| B0001.1 [Caenorhabditis elegans] 1.0E-118
blast CAE62189 Hypothetical protein CBG06236 [Caenorhabditis briggsae] 1.0E-113
blast AAN84855 Hypothetical protein C31H1.6b [Caenorhabditis elegans] ref|NP_872099.1| C31H1.6b [Caenorhabditis elegans] 4.0E-23
blast AAN84855 Hypothetical protein C31H1.6b [Caenorhabditis elegans] ref|NP_872099.1| C31H1.6b [Caenorhabditis elegans] 5.0E-23
Sequence
Target Sequence 
>C. ELEGANS:178830_AT
aaacgccgtgtgaaatcgccgagctaaaagccggtttcaagcacgagatgcacttcaaca
atctcaatgagaattgtcaaacggaagttctatcttggtcagttgacagtaatgtctctg
ttccaccacattatatgactgaagcatcgattattattgaagaaatgaattatagaggaa
gttattcagttgtttcaagtctttctggaactgttgtcgtttctattcgaagacgccgtg
acaatgtgctcataatgccaattcgtgtcaccatcgctgaagttttccgtgctcaactgg
atagccctcattgcaagaaagaggtcaaacaagtcgtgagcatcgatcaacatcgcgtcg
tccgtcttgtgagcaagggctcatgccaattccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGCCGTGTGAAATCGCCGAGCT 390 125 281 Antisense
AAAGCCGGTTTCAAGCACGAGATGC 592 123 307 Antisense
GACAGTAATGTCTCTGTTCCACCAC 270 369 385 Antisense
GTCTTTCTGGAACTGTTGTCGTTTC 90 469 479 Antisense
GAAGACGCCGTGACAATGTGCTCAT 428 339 509 Antisense
TAATGCCAATTCGTGTCACCATCGC 235 635 533 Antisense
TCACCATCGCTGAAGTTTTCCGTGC 62 627 548 Antisense
CTCAACTGGATAGCCCTCATTGCAA 511 227 572 Antisense
GAGCATCGATCAACATCGCGTCGTC 272 389 618 Antisense
CGTCGTCCGTCTTGTGAGCAAGGGC 237 245 636 Antisense
GAGCAAGGGCTCATGCCAATTCCAA 254 391 651 Antisense
Sequence Source Affymetrix Proprietary Database