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[178829_at]

Description R144.3 /REP_DB=WormBase Gene ID /WP=CE25090 /TR=Q09998 /GB=AAK21457.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 32      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 367
(3)
P 		279.5
(-3)
P 		355.9
(2.2)
P 		336.6
(0.9)
P 		88
B 347.8
(-3)
P 		359.8
(-1)
P 		383.5
(3)
P 		382.1
(2.8)
P 		36
C 348.4
(-2.8)
P 		421.5
(3)
P 		345.4
(-3)
P 		358.6
(-2)
P 		76
avr 354.4
(-2.4) 		353.6
(-3) 		361.6
(3) 		359.1
(1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 361
(-2.4)
P 		515.6
(0.6)
P 		477.3
(-0.1)
P 		634.1
(3)
P 		331.6
(-3)
P 		364.8
(-2.3)
P 		303
B 393.1
(-2.3)
P 		440.5
(-1.1)
P 		593.8
(3)
P 		522.3
(1.1)
P 		502.7
(0.6)
P 		368.4
(-3)
P 		225
C 387.7
(-3)
P 		467
(-0.9)
P 		612.9
(3)
P 		404.3
(-2.6)
P 		449.3
(-1.4)
P 		440.3
(-1.6)
P 		225
avr 380.6
(-3) 		474.4
(0.1) 		561.3
(3) 		520.2
(1.6) 		427.9
(-1.4) 		391.2
(-2.6) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 133.6
(3)
P 		60.7
(-2.2)
P 		93
(0.1)
P 		49.3
(-3)
P 		84
B 110.9
(3)
P 		88.9
(-1.5)
P 		88.9
(-1.5)
P 		81.4
(-3)
P 		30
C 115.3
(2.4)
P 		121.2
(3)
P 		120.4
(2.9)
P 		60.5
(-3)
P 		61
avr 119.9
(3) 		90.3
(-0.2) 		100.8
(1) 		63.7
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 66.5
(-3)
P 		183.4
(3)
P 		103.9
(-1.1)
P 		160.8
(1.8)
P 		100.1
(-1.3)
P 		88.8
(-1.9)
P 		117
B 136.8
(-3)
P 		146.6
(-2.1)
P 		144.2
(-2.3)
P 		138.3
(-2.9)
P 		204.2
(3)
P 		137.4
(-2.9)
P 		67
C 143.7
(2)
P 		142.5
(1.9)
P 		156
(3)
P 		81.3
(-3)
P 		145.4
(2.1)
P 		147.4
(2.3)
P 		75
avr 115.7
(-3) 		157.5
(3) 		134.7
(-0.3) 		126.8
(-1.4) 		149.9
(1.9) 		124.5
(-1.7) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6021
Sequence Type Exemplar sequence
Representative Public ID R144.3 NCBI
Target Description R144.3 /REP_DB=WormBase Gene ID /WP=CE25090 /TR=Q09998 /GB=AAK21457.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065666(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065666 NCBI Caenorhabditis elegans R144.3 (R144.3) mRNA, complete cds. 9/11 None
GENEFINDER00000019442 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5023285:5024960:1 11/11 None
R144.3 ENSEMBL cdna:known chromosome:CEL140:III:5022008:5024960:1 gene:R144.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019428 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5022006-5024959(+) 96.83 100.0
Public Domain and Genome References
Gene Title
Ensembl R144.3
Entrez Gene 187900 Entrez gene
SwissProt Q09998 EMBL-EBI
WormBase CE38538 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MG-U74BV2:163701_AT RIKEN cDNA 1500041J02 gene mm
MG-U74BV2:162688_AT RIKEN cDNA 1500041J02 gene mm
MOE430B:1428487_S_AT RIKEN cDNA 1500041J02 gene mm
MOUSE430_2:1428487_S_AT RIKEN cDNA 1500041J02 gene mm
MOE430B:1460510_A_AT RIKEN cDNA 1500041J02 gene mm
MOUSE430_2:1460510_A_AT RIKEN cDNA 1500041J02 gene mm
MU19KSUBC:TC38300_AT RIKEN cDNA 1500041J02 gene (1500041J02Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast NP_498067 R144.3 [Caenorhabditis elegans] gb|AAK21457.2| Hypothetical protein R144.3 [Caenorhabditis elegans] 0.0
blast T16757 hypothetical protein R144.3 - Caenorhabditis elegans 0.0
blast T16757 hypothetical protein R144.3 - Caenorhabditis elegans 1.0E-180
blast T16757 hypothetical protein R144.3 - Caenorhabditis elegans 6.0E-88
blast CAE70081 Hypothetical protein CBG16522 [Caenorhabditis briggsae] 4.0E-82
blast NP_498067 R144.3 [Caenorhabditis elegans] gb|AAK21457.2| Hypothetical protein R144.3 [Caenorhabditis elegans] 4.0E-72
blast CAE70081 Hypothetical protein CBG16522 [Caenorhabditis briggsae] 1.0E-70
blast CAE70081 Hypothetical protein CBG16522 [Caenorhabditis briggsae] 1.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR005340 EMBL-EBI Protein of unknown function UPF0083 9.0E-9
Pfam IPR005340 EMBL-EBI Protein of unknown function UPF0083 1.5E-14
Sequence
Target Sequence 
>C. ELEGANS:178829_AT
gattgattggattttcccgggacgaaatgtttaaagtcgtgtctgatgtatccgattatc
acaattttgttccatggtgtcggtcgtctacagtaacccacgagcacgaaagctcacaga
ttgcgacgctggaaattgggtttccaccactttcagagaaatattcgagtcgtgtgattc
acattaagccatctgttgttcatggaaaaccatctgttgaacgctcatgtactcttcact
atgacttagtttttgaattcgagtcagcttttcactcaagaatcgctcatcttttcttcg
ataaagtcgtaaaaactatggtttcagcatttttgcaccgcgctgaaaagctttatggac
caccggaattcccacactcaccaccgcagatacgccggactcgactcgaaagacagcgcg
cagactgtttggtgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGATTGGATTTTCCCGGGACGA 271 423 608 Antisense
AATTTTGTTCCATGGTGTCGGTCGT 33 163 670 Antisense
ACAGTAACCCACGAGCACGAAAGCT 505 107 697 Antisense
GAAAGCTCACAGATTGCGACGCTGG 708 359 715 Antisense
TGGGTTTCCACCACTTTCAGAGAAA 297 549 744 Antisense
GTTGAACGCTCATGTACTCTTCACT 422 415 823 Antisense
GTCAGCTTTTCACTCAAGAATCGCT 184 467 870 Antisense
GAATCGCTCATCTTTTCTTCGATAA 26 331 887 Antisense
ATGGTTTCAGCATTTTTGCACCGCG 421 51 925 Antisense
GACTCGACTCGAAAGACAGCGCGCA 8 375 1005 Antisense
GACAGCGCGCAGACTGTTTGGTGCG 240 367 1019 Antisense
Sequence Source Affymetrix Proprietary Database