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[178826_at]

Description C34F6.5 /REP_DB=WormBase Gene ID /WP=CE15674 /TR=O17639 /GB=CAB03939.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 111.9
(-3)
A 		186.7
(3)
A 		147.3
(-0.2)
A 		137.6
(-0.9)
A 		75
B 126.8
(-3)
A 		133.9
(-2.5)
A 		208.5
(3)
M 		171.6
(0.3)
A 		82
C 136
(-0.5)
A 		172.6
(1.9)
A 		190
(3)
P 		97.8
(-3)
A 		92
avr 124.9
(-3) 		164.4
(1.2) 		181.9
(3) 		135.7
(-1.9) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 117.6
(-1.6)
A 		146.9
(-0.2)
A 		213.7
(3)
P 		142.3
(-0.4)
P 		191.7
(2)
P 		87.7
(-3)
A 		126
B 126.3
(-2.9)
A 		134
(-2.3)
A 		192.4
(2.5)
A 		198.1
(3)
P 		164.5
(0.2)
P 		125
(-3)
P 		73
C 115.1
(-1.3)
P 		138.9
(1.3)
A 		127.1
(0)
A 		130.1
(0.4)
A 		99.6
(-3)
P 		153.9
(3)
P 		54
avr 119.7
(-3) 		139.9
(-0.9) 		177.7
(3) 		156.8
(0.8) 		151.9
(0.3) 		122.2
(-2.7) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 40.7
(3)
A 		40.5
(2.9)
A 		38.5
(2.4)
A 		20.1
(-3)
A 		21
B 40.4
(-0.1)
A 		33.1
(-3)
A 		48.3
(3)
M 		36.6
(-1.6)
A 		15
C 45
(0.4)
A 		49.6
(1)
A 		66.2
(3)
P 		16.5
(-3)
A 		50
avr 42
(1) 		41.1
(0.8) 		51
(3) 		24.4
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 21.7
(-3)
A 		52.2
(2.1)
A 		46.5
(1.1)
P 		36.1
(-0.6)
P 		57.8
(3)
P 		21.4
(-3)
A 		36
B 44
(-3)
A 		44.6
(-2.8)
A 		46.7
(-2.3)
A 		52.5
(-0.8)
P 		66.8
(3)
P 		46.6
(-2.3)
P 		23
C 42.7
(0.9)
P 		42.4
(0.8)
A 		32.4
(-1.5)
A 		26.2
(-3)
A 		32.2
(-1.6)
P 		51.5
(3)
P 		25
avr 36.1
(-3) 		46.4
(0.8) 		41.9
(-0.9) 		38.3
(-2.2) 		52.3
(3) 		39.8
(-1.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17252
Sequence Type Exemplar sequence
Representative Public ID C34F6.5 NCBI
Target Description C34F6.5 /REP_DB=WormBase Gene ID /WP=CE15674 /TR=O17639 /GB=CAB03939.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077472 NCBI Caenorhabditis elegans C34F6.5 (C34F6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000004412 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11207365:11208795:-1 11/11 None
SNAP00000004404 ENSEMBL cdna:SNAP chromosome:CEL140:X:11208292:11208795:-1 11/11 None
C34F6.5 ENSEMBL cdna:known chromosome:CEL140:X:11208292:11208795:-1 gene:C34F6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11208291-11208795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34F6.5
Entrez Gene 183215 Entrez gene
SwissProt O17639 EMBL-EBI
WormBase CE15674 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03940 Hypothetical protein C34F6.6 [Caenorhabditis elegans] ref|NP_509872.1| C34F6.6 [Caenorhabditis elegans] 1.0E-65
blast CAB03939 Hypothetical protein C34F6.5 [Caenorhabditis elegans] ref|NP_509873.1| C34F6.5 [Caenorhabditis elegans] 1.0E-47
blast CAB03939 Hypothetical protein C34F6.5 [Caenorhabditis elegans] ref|NP_509873.1| C34F6.5 [Caenorhabditis elegans] 3.0E-45
blast CAE70682 Hypothetical protein CBG17399 [Caenorhabditis briggsae] 5.0E-28
Sequence
Target Sequence 
>C. ELEGANS:178826_AT
ctgccacgacgtcgtcggcaggagcaacgaacagagagcaagctgaccgtcacatggaga
tgatacggtatcgagggtattctgtcagaagtattccacttgatagaaacatggaacacg
ctgcaggaccaagcccaccagtagaacaaggtgtccaattggaacaagatctagaagaaa
ttattgatattcatgaggtggatgatgaagaagaagaagatgaagaccagaatttgatag
aacccgtacgattgacaccgccgaatcccgttccttgtcaactggacaagtttcatcggt
accta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCCACGACGTCGTCGGCAGGAGC 84 235 17 Antisense
GAACAGAGAGCAAGCTGACCGTCAC 337 351 45 Antisense
GCTGACCGTCACATGGAGATGATAC 20 297 58 Antisense
ACGGTATCGAGGGTATTCTGTCAGA 685 95 81 Antisense
TTCTGTCAGAAGTATTCCACTTGAT 651 693 96 Antisense
CATGGAACACGCTGCAGGACCAAGC 628 207 126 Antisense
GACCAAGCCCACCAGTAGAACAAGG 304 383 143 Antisense
GACCAGAATTTGATAGAACCCGTAC 111 383 241 Antisense
ATAGAACCCGTACGATTGACACCGC 684 15 253 Antisense
ATCCCGTTCCTTGTCAACTGGACAA 473 29 281 Antisense
ACTGGACAAGTTTCATCGGTACCTA 129 97 297 Antisense
Sequence Source Affymetrix Proprietary Database