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[178825_at]

Description C49F5.5 /REP_DB=WormBase Gene ID /WP=CE08856 /TR=O17681 /GB=CAB03976.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 39.9
(-1.2)
A 		63.9
(3)
A 		35.4
(-2)
A 		29.6
(-3)
A 		34
B 46.6
(0.6)
A 		44.1
(0.4)
A 		73.2
(3)
A 		5.8
(-3)
A 		67
C 33.8
(-2.4)
A 		35.2
(-2.1)
A 		31.2
(-3)
A 		58.5
(3)
A 		27
avr 40.1
(0.2) 		47.7
(3) 		46.6
(2.6) 		31.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 47.2
(1.8)
A 		37.9
(-0.1)
A 		24.1
(-3)
A 		26.8
(-2.4)
A 		24.7
(-2.9)
A 		52.8
(3)
A 		29
B 16
(-1.4)
A 		30.2
(0.3)
A 		6.4
(-2.6)
A 		52.1
(3)
A 		45
(2.1)
A 		3.1
(-3)
A 		49
C 23.7
(0.8)
A 		31.2
(2.2)
A 		3.8
(-3)
A 		7.5
(-2.3)
A 		35.5
(3)
A 		16.2
(-0.7)
A 		32
avr 29
(1.5) 		33.1
(2.5) 		11.4
(-3) 		28.8
(1.4) 		35.1
(3) 		24
(0.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.5
(3)
A 		13.9
(2.6)
A 		9.3
(-0.1)
A 		4.3
(-3)
A 		10
B 14.9
(2.2)
A 		10.9
(0.7)
A 		17
(3)
A 		1.2
(-3)
A 		16
C 11.2
(3)
A 		10.1
(-2.1)
A 		10.9
(1.6)
A 		9.9
(-3)
A 		1
avr 13.5
(3) 		11.6
(1.6) 		12.4
(2.2) 		5.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.7
(-0.5)
A 		13.5
(3)
A 		5.2
(-3)
A 		6.8
(-1.8)
A 		7.5
(-1.3)
A 		12.9
(2.6)
A 		8
B 5.6
(-1.5)
A 		10
(0.1)
A 		1.6
(-2.9)
A 		13.8
(1.4)
A 		18.3
(3)
A 		1.2
(-3)
A 		17
C 8.8
(1.5)
A 		9.5
(1.9)
A 		1
(-3)
A 		1.5
(-2.7)
A 		11.5
(3)
A 		5.4
(-0.5)
A 		11
avr 7.7
(0.1) 		11
(2.1) 		2.6
(-3) 		7.4
(-0.1) 		12.4
(3) 		6.5
(-0.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16484
Sequence Type Exemplar sequence
Representative Public ID C49F5.5 NCBI
Target Description C49F5.5 /REP_DB=WormBase Gene ID /WP=CE08856 /TR=O17681 /GB=CAB03976.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077605 NCBI Caenorhabditis elegans C49F5.5 (C49F5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000033514 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11985801:11987150:1 11/11 None
C49F5.5 ENSEMBL cdna:known chromosome:CEL140:X:11985801:11987150:1 gene:C49F5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033509 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11985800-11987150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49F5.5
Entrez Gene 183614 Entrez gene
SwissProt O17681 EMBL-EBI
WormBase CE08856 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3712 transcription cofactor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03976 Hypothetical protein C49F5.5 [Caenorhabditis elegans] ref|NP_510006.1| C49F5.5 [Caenorhabditis elegans] 4.0E-86
blast CAA82665 Hypothetical protein K03H1.10 [Caenorhabditis elegans] emb|CAA82940.1| Hypothetical protein K03H1.10 [Caenorhabditis elegans] ref|NP_499201.1| K03H1.10 [Caenorhabditis elegans] 9.0E-20
blast XP_788821 PREDICTED: similar to CREB binding protein [Strongylocentrotus purpuratus] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000197 EMBL-EBI TAZ finger 2.5E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510006.1 1 19-41
C49F5.5 1 19-41
GENEFINDER00000033514 1 19-41
Sequence
Target Sequence 
>C. ELEGANS:178825_AT
gggccgccgatatttgatggcgcgacaaagaaaagagaggtggtcgtcgtcatcactttt
caaattttcttcgcacttttgggcgcaatccaaatgatttcgctttccgatccttcaaga
attgatccacacatcttgaaggttatcaaagaacagctgattttgttgcttcatgcaaat
gtgtgcaccaaaagagacagggagaattaccaagccgcgatcaatggtcaacctgctcgt
catccacgctgcgatcttcccagttgcggactcttcaaatacacgctttctcatttgaac
atgtgcacgaacggatcgcattgtctcattgattactgtaacacctcgaagcaactcatc
aaacactggcgtgagtgccaaaatcgtgcttgtgcaatttgtgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCCGCCGATATTTGATGGCGCGA 227 491 28 Antisense
AAGAGAGGTGGTCGTCGTCATCACT 19 155 60 Antisense
TTCTTCGCACTTTTGGGCGCAATCC 194 687 94 Antisense
CAGGGAGAATTACCAAGCCGCGATC 104 207 225 Antisense
GCGATCAATGGTCAACCTGCTCGTC 709 289 244 Antisense
TTCCCAGTTGCGGACTCTTCAAATA 8 697 284 Antisense
AATACACGCTTTCTCATTTGAACAT 603 171 305 Antisense
CGAACGGATCGCATTGTCTCATTGA 447 251 335 Antisense
TACTGTAACACCTCGAAGCAACTCA 322 645 361 Antisense
AAGCAACTCATCAAACACTGGCGTG 42 153 376 Antisense
TCGTGCTTGTGCAATTTGTGCTCCA 673 605 411 Antisense
Sequence Source Affymetrix Proprietary Database