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[178824_at]

Description F55C9.7 /REP_DB=WormBase Gene ID /WP=CE18739 /TR=Q9XUY7 /GB=CAB04475.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 26.3
(-3)
A 		30.4
(-2.5)
A 		26.4
(-3)
A 		80.1
(3)
A 		54
B 47
(-0.4)
A 		55.1
(3)
A 		42.7
(-2.2)
A 		40.7
(-3)
A 		14
C 7.5
(-3)
A 		69.7
(3)
A 		39.4
(0.1)
A 		57.1
(1.8)
A 		62
avr 26.9
(-3) 		51.7
(1.6) 		36.2
(-1.3) 		59.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 48.9
(3)
A 		32.5
(-3)
A 		38.3
(-0.9)
A 		36.2
(-1.6)
A 		48.7
(2.9)
A 		45.1
(1.6)
A 		16
B 42.3
(1.7)
A 		18.4
(-3)
A 		37.4
(0.7)
A 		31
(-0.5)
A 		25.1
(-1.7)
A 		49.2
(3)
A 		31
C 35.1
(0.9)
A 		50.3
(3)
A 		6.2
(-3)
A 		25.5
(-0.4)
A 		33.3
(0.7)
A 		39
(1.5)
A 		44
avr 42.1
(2.2) 		33.7
(-0.8) 		27.3
(-3) 		30.9
(-1.7) 		35.7
(-0.1) 		44.4
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.6
(0.5)
A 		6.6
(-3)
A 		6.9
(-2.6)
A 		11.7
(3)
A 		5
B 15
(3)
A 		13.6
(1.7)
A 		9.9
(-1.9)
A 		8.7
(-3)
A 		6
C 2.5
(-3)
A 		20
(3)
A 		13.7
(0.8)
A 		9.6
(-0.6)
A 		18
avr 9
(-3) 		13.4
(3) 		10.2
(-1.4) 		10
(-1.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9
(-2.3)
A 		11.6
(0.1)
A 		8.3
(-3)
A 		9.2
(-2.2)
A 		14.7
(3)
A 		11
(-0.5)
A 		6
B 14.7
(1.2)
A 		6.1
(-3)
A 		9.1
(-1.5)
A 		8.2
(-2)
A 		10.2
(-1)
A 		18.3
(3)
A 		12
C 13
(2)
A 		15.3
(3)
A 		1.6
(-3)
A 		5.1
(-1.5)
A 		10.8
(1)
A 		13
(2)
A 		14
avr 12.2
(1.5) 		11
(0.6) 		6.3
(-3) 		7.5
(-2.1) 		11.9
(1.3) 		14.1
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13244
Sequence Type Exemplar sequence
Representative Public ID F55C9.7 NCBI
Target Description F55C9.7 /REP_DB=WormBase Gene ID /WP=CE18739 /TR=Q9XUY7 /GB=CAB04475.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075355 NCBI Caenorhabditis elegans F55C9.7 (F55C9.7) mRNA, complete cds. 11/11 None
GENEFINDER00000026281 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19300394:19303034:1 11/11 None
F55C9.7 ENSEMBL cdna:known chromosome:CEL140:V:19300394:19303034:1 gene:F55C9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19300393-19303034(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.7
Entrez Gene 186295 Entrez gene
SwissProt Q9XUY7 EMBL-EBI
WormBase CE18739 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04475 Hypothetical protein F55C9.7 [Caenorhabditis elegans] ref|NP_507756.1| F55C9.7 [Caenorhabditis elegans] 0.0
blast CAB04475 Hypothetical protein F55C9.7 [Caenorhabditis elegans] ref|NP_507756.1| F55C9.7 [Caenorhabditis elegans] 1.0E-175
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 1.0E-64
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 2.0E-64
blast CAE53731 Hypothetical protein C43D7.9 [Caenorhabditis elegans] ref|NP_001023705.1| C43D7.9 [Caenorhabditis elegans] 1.0E-59
blast CAE53731 Hypothetical protein C43D7.9 [Caenorhabditis elegans] ref|NP_001023705.1| C43D7.9 [Caenorhabditis elegans] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.4E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.3E-5
Sequence
Target Sequence 
>C. ELEGANS:178824_AT
aattggaccccttctgatgtcaaattgcgaaaacttatagatcatattaaatgcgtattc
catacccatcaaatatactttctaagaatccacactgattctcacaattggaaatcaata
catgaagctcttgacggcgtggcctgttctcatacaagcctgtactttcagtctcaggac
gtttggcttcagcgaattgtcaaccagttttccggcagttttctttatctagatcttgat
gtgaattctatctggaataaccaaataatgtgtactaaccgacgaaatttgtatatttcc
acatcgtgcaccgaacttctaagtgtgaactgtacacacttacatgtaaaccaaagagtc
cgcgcagtggatgccaatatatttttgagacactggattcgaggagcctttcagtcactg
aagactctacatttctctatggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGACCCCTTCTGATGTCAAAT 546 177 961 Antisense
ATGCGTATTCCATACCCATCAAATA 696 41 1011 Antisense
GGCCTGTTCTCATACAAGCCTGTAC 121 543 1101 Antisense
AAGCCTGTACTTTCAGTCTCAGGAC 545 149 1116 Antisense
TCTCAGGACGTTTGGCTTCAGCGAA 238 613 1132 Antisense
GCGAATTGTCAACCAGTTTTCCGGC 399 287 1152 Antisense
TTTTCCGGCAGTTTTCTTTATCTAG 243 677 1168 Antisense
TATATTTCCACATCGTGCACCGAAC 82 661 1252 Antisense
AGTCCGCGCAGTGGATGCCAATATA 587 59 1317 Antisense
GACACTGGATTCGAGGAGCCTTTCA 388 367 1349 Antisense
GAAGACTCTACATTTCTCTATGGGA 322 339 1380 Antisense
Sequence Source Affymetrix Proprietary Database