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[178823_at]

Description C09G9.3 /REP_DB=WormBase Gene ID /WP=CE03002 /TR=Q17873 /GB=CAA90973.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 50.2
(1)
A 		15.8
(-2.1)
A 		5.3
(-3)
A 		73.5
(3)
A 		68
B 40.1
(-0.9)
A 		26.9
(-3)
A 		27.1
(-3)
A 		64.4
(3)
A 		38
C 56.1
(-1.2)
A 		30.9
(-2.2)
A 		11.6
(-3)
A 		163.4
(3)
A 		152
avr 48.8
(-0.6) 		24.5
(-2.3) 		14.7
(-3) 		100.4
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 6.3
(-2.7)
A 		6.4
(-2.7)
A 		44.5
(3)
A 		4.3
(-3)
A 		11.3
(-2)
A 		7.1
(-2.6)
A 		40
B 12.1
(-2.1)
A 		42.3
(3)
A 		20.9
(-0.6)
A 		20.2
(-0.8)
A 		39.6
(2.5)
A 		7
(-3)
A 		35
C 3
(-3)
A 		73
(1.6)
A 		16.2
(-2.1)
A 		93.4
(3)
A 		2.8
(-3)
A 		3.4
(-3)
A 		91
avr 7.1
(-2.8) 		40.6
(3) 		27.2
(0.7) 		39.3
(2.8) 		17.9
(-0.9) 		5.8
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 18.3
(3)
A 		3.4
(-2.3)
A 		1.4
(-3)
A 		10.8
(0.3)
A 		17
B 12.8
(2.3)
A 		6.7
(-2.7)
A 		6.3
(-3)
A 		13.7
(3)
A 		7
C 18.6
(0.7)
A 		8.9
(-1.8)
A 		4
(-3)
A 		27.6
(3)
A 		24
avr 16.6
(2.6) 		6.3
(-1.9) 		3.9
(-3) 		17.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		2.3
(-2.2)
A 		9.7
(3)
A 		1.1
(-3)
A 		3.4
(-1.4)
A 		1.7
(-2.6)
A 		9
B 4.2
(-2.3)
A 		14.1
(2.1)
A 		5.1
(-1.9)
A 		5.4
(-1.8)
A 		16.1
(3)
A 		2.6
(-3)
A 		14
C 1.1
(-2.9)
A 		22.3
(3)
A 		4.1
(-2.1)
A 		18.8
(2)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		21
avr 2.2
(-2.8) 		12.9
(3) 		6.3
(-0.6) 		8.4
(0.6) 		6.8
(-0.3) 		1.8
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9332
Sequence Type Exemplar sequence
Representative Public ID C09G9.3 NCBI
Target Description C09G9.3 /REP_DB=WormBase Gene ID /WP=CE03002 /TR=Q17873 /GB=CAA90973.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069137 NCBI Caenorhabditis elegans C09G9.3 (C09G9.3) mRNA, complete cds. 11/11 None
C09G9.3 ENSEMBL cdna:known chromosome:CEL140:IV:8870084:8873125:-1 gene:C09G9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008788 7/11 Cross Hyb Matching Probes None
GENEFINDER00000008801 1/11 Cross Hyb Matching Probes None
GENEFINDER00000008804 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8870089-8873131(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G9.3
Entrez Gene 182463 Entrez gene
SwissProt Q17873 EMBL-EBI
WormBase CE03002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90973 Hypothetical protein C09G9.3 [Caenorhabditis elegans] ref|NP_501538.1| C09G9.3 [Caenorhabditis elegans] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.4E-26
Sequence
Target Sequence 
>C. ELEGANS:178823_AT
cagaatttgggcttcaccctgggttctttcaactgccgtctcccggtgctcgggaatgat
tatagtgttcttgctcatcctcaggatgatgccttcaacacatgcttgcctgcaaactat
tccaagtaccacaccatctccaacaggttccacaaccactgatcccaccgtcactaccac
caccactgtcgttcccactgattgttgcccagtagtacctctaatcttgactgatagtga
tttccccgatggaacagccacttttgcttatgacagtaacacgtgtagaactgtcgccac
tgccacatgctcaagtaccgatacttcattggatctttttgctgcactcgttggaaatgc
tgttaattatttggagtatgctgaaaatacagctacagttcaattaatttgtagttccgg
ccaatggacatacactcggatgggatctactcttgttttgaccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAATTTGGGCTTCACCCTGGGTT 70 205 96 Antisense
GATTATAGTGTTCTTGCTCATCCTC 29 431 153 Antisense
GATGATGCCTTCAACACATGCTTGC 98 411 180 Antisense
CAACAGGTTCCACAACCACTGATCC 552 189 236 Antisense
TGTTGCCCAGTAGTACCTCTAATCT 31 563 298 Antisense
TGACTGATAGTGATTTCCCCGATGG 2 571 323 Antisense
GGAACAGCCACTTTTGCTTATGACA 320 529 346 Antisense
ACACGTGTAGAACTGTCGCCACTGC 288 109 374 Antisense
TCATTGGATCTTTTTGCTGCACTCG 413 619 421 Antisense
GTTCCGGCCAATGGACATACACTCG 517 441 509 Antisense
GGGATCTACTCTTGTTTTGACCACA 479 493 537 Antisense
Sequence Source Affymetrix Proprietary Database