[Home] | [Total List]

[178819_s_at]

Description F44G3.7 /REP_DB=WormBase Gene ID /WP=CE16038 /TR=O45520 /GB=CAB05519.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 4.7
(-3)
A 		7.3
(-0.9)
A 		6.5
(-1.6)
A 		12.3
(3)
A 		8
B 10.3
(0.1)
A 		10.3
(0.1)
A 		4.6
(-3)
A 		15.5
(3)
A 		11
C 49.5
(1.5)
A 		7.5
(-2.7)
A 		4.3
(-3)
A 		64.7
(3)
A 		60
avr 21.5
(0.8) 		8.4
(-2.2) 		5.1
(-3) 		30.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 8
(-2.9)
A 		7.5
(-2.9)
A 		35.4
(-1.5)
A 		5.1
(-3)
A 		71
(0.3)
A 		126.5
(3)
P 		121
B 6.7
(-2.8)
A 		8.1
(-2.7)
A 		14.8
(-2.4)
A 		3.3
(-3)
A 		31.9
(-1.4)
A 		110.8
(3)
P 		108
C 10.3
(-2.8)
A 		6.3
(-3)
A 		8.4
(-2.9)
A 		7.8
(-2.9)
A 		70.3
(0.9)
A 		105.7
(3)
P 		99
avr 8.3
(-2.8) 		7.3
(-2.9) 		19.5
(-2.2) 		5.4
(-3) 		57.7
(-0.1) 		114.3
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.7
(-0)
A 		1.6
(-3)
A 		1.7
(-0)
A 		1.8
(3)
A 		0
B 3.3
(3)
A 		2.5
(0.8)
A 		1.1
(-3)
A 		3.3
(3)
A 		2
C 16.4
(3)
A 		2.1
(-2.8)
A 		1.5
(-3)
A 		10.9
(0.8)
A 		15
avr 7.1
(3) 		2.1
(-2.3) 		1.4
(-3) 		5.3
(1.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 1.5
(-3)
A 		2.7
(-2.7)
A 		7.7
(-1.7)
A 		1.3
(-3)
A 		21.4
(1.1)
A 		30.8
(3)
P 		30
B 2.3
(-2.8)
A 		2.7
(-2.7)
A 		3.6
(-2.6)
A 		0.9
(-3)
A 		13
(-1.2)
A 		41.3
(3)
P 		40
C 3.8
(-2.6)
A 		1.9
(-2.9)
A 		2.1
(-2.9)
A 		1.6
(-3)
A 		22.8
(0.8)
A 		35.4
(3)
P 		34
avr 2.5
(-2.8) 		2.4
(-2.8) 		4.5
(-2.4) 		1.3
(-3) 		19.1
(0.1) 		35.8
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13239
Sequence Type Exemplar sequence
Representative Public ID F44G3.7 NCBI
Target Description F44G3.7 /REP_DB=WormBase Gene ID /WP=CE16038 /TR=O45520 /GB=CAB05519.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074661 NCBI Caenorhabditis elegans F44G3.7 (F44G3.7) mRNA, complete cds. 11/11 None
SNAP00000003421 ENSEMBL cdna:SNAP chromosome:CEL140:V:16136471:16138551:-1 11/11 None
GENEFINDER00000003426 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16133767:16139700:-1 11/11 None
F44G3.7 ENSEMBL cdna:known chromosome:CEL140:V:16136471:16139703:-1 gene:F44G3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16136470-16139700(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44G3.7
Entrez Gene 180083 Entrez gene
SwissProt O45520 EMBL-EBI
WormBase CE16038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05519 Hypothetical protein F44G3.7 [Caenorhabditis elegans] ref|NP_507062.1| F44G3.7 [Caenorhabditis elegans] 0.0
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-133
blast CAB02959 Hypothetical protein F15D3.4 [Caenorhabditis elegans] ref|NP_492950.1| F15D3.4 [Caenorhabditis elegans] 1.0E-130
blast CAB02959 Hypothetical protein F15D3.4 [Caenorhabditis elegans] ref|NP_492950.1| F15D3.4 [Caenorhabditis elegans] 1.0E-118
blast CAE69268 Hypothetical protein CBG15321 [Caenorhabditis briggsae] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507062.1 1 677-696
F44G3.7 1 677-696
SNAP00000003421 1 476-495
Sequence
Target Sequence 
>C. ELEGANS:178819_S_AT
cgatgtatcccaactggtggtgccccacaattttccactcttttcgatcattaccacaag
gctgtttttaacatccagtattcggatgaaaagaaaaaagaggaaaatgtcagcgaacca
cacaagcgtaaaaaaaagacggaaagaacgattgacgtgttggctccgaatagattgcac
cagtgtatcgatgattcgtcagcctcttcgttcggaaaatatcagttgaaaacttttgag
ctgagccaagatgtcaaagttaaacttcgcaatgtagataaggctgaggaaaaaaaaccg
aaagataagaagcagaaagaagctgaaaagcagttcagagaggattttaaacggaaatgg
ggtccgctgatgacgtaccacgaggatcatttgaagtgtgtccagccaagttttgaacct
acccaaagtgacactcaatttgaagataataaacaataccatgggcatcctgaattcact
ctcaattttggaaaaccattctactacattatgacgcgtatgctcaatggcgttccgttt
attgtttgcgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATGTATCCCAACTGGTGGTGCCC 449 249 1537 Antisense
GAACGATTGACGTGTTGGCTCCGAA 651 345 1682 Antisense
GGCTCCGAATAGATTGCACCAGTGT 349 539 1698 Antisense
GTGTATCGATGATTCGTCAGCCTCT 706 485 1719 Antisense
GTCAGCCTCTTCGTTCGGAAAATAT 673 465 1734 Antisense
AAATGGGGTCCGCTGATGACGTACC 389 119 1891 Antisense
GTGTCCAGCCAAGTTTTGAACCTAC 633 487 1934 Antisense
GAACCTACCCAAAGTGACACTCAAT 535 345 1951 Antisense
ACCATGGGCATCCTGAATTCACTCT 571 85 1994 Antisense
GACGCGTATGCTCAATGGCGTTCCG 384 381 2049 Antisense
GGCGTTCCGTTTATTGTTTGCGTTG 218 537 2065 Antisense
Sequence Source Affymetrix Proprietary Database